Tdicoccoides TRIDC3BG033210
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG033210 [ TRIDC3BG033210] |
3B | 322932924 | 322947342 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG033210.17 TRIDC3BG033210.17 |
High | No | 871 | OG0005840 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -26.693 AMFE: -0.612 GC content %: 43.628 | |
| Tdicoccoides_TRIDC3BG033210.18 TRIDC3BG033210.18 |
High | No | 1387 | OG0025011 | Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -25.674 AMFE: -0.669 GC content %: 38.356 | |
| Tdicoccoides_TRIDC3BG033210.3 TRIDC3BG033210.3 |
High | No | 1733 | OG0005840 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -28.125 AMFE: -0.657 GC content %: 42.816 | |
| Tdicoccoides_TRIDC3BG033210.7 TRIDC3BG033210.7 |
High | No | 1014 | OG0005840 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -27.899 AMFE: -0.589 GC content %: 47.337 | |
| Tdicoccoides_TRIDC3BG033210.8 TRIDC3BG033210.8 |
High | No | 315 | OG0358982 | Get ORF Coding potential... Type: noncoding Potential: -0.703 Folding energies... MFEI: -29.968 AMFE: -0.536 GC content %: 55.873 | |
| Tdicoccoides_TRIDC3BG033210.9 TRIDC3BG033210.9 |
High | No | 1343 | OG0005840 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -26.493 AMFE: -0.622 GC content %: 42.591 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
