Tdicoccoides TRIDC3BG037790
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG037790 [ TRIDC3BG037790] |
3B | 413729647 | 413739298 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG037790.1 TRIDC3BG037790.1 |
Low | No | 926 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -29.104 AMFE: -0.642 GC content %: 45.356 | |
| Tdicoccoides_TRIDC3BG037790.10 TRIDC3BG037790.10 |
High | No | 1361 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.362 Folding energies... MFEI: -22.498 AMFE: -0.650 GC content %: 34.607 | |
| Tdicoccoides_TRIDC3BG037790.12 TRIDC3BG037790.12 |
Low | Yes | 2474 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -29.301 AMFE: -0.723 GC content %: 40.501 | |
| Tdicoccoides_TRIDC3BG037790.13 TRIDC3BG037790.13 |
Low | Yes | 2741 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -28.756 AMFE: -0.725 GC content %: 39.657 | |
| Tdicoccoides_TRIDC3BG037790.14 TRIDC3BG037790.14 |
Low | Yes | 2213 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.358 Folding energies... MFEI: -27.230 AMFE: -0.711 GC content %: 38.319 | |
| Tdicoccoides_TRIDC3BG037790.19 TRIDC3BG037790.19 |
High | No | 1996 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -29.634 AMFE: -0.716 GC content %: 41.383 | |
| Tdicoccoides_TRIDC3BG037790.2 TRIDC3BG037790.2 |
High | No | 1002 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -28.224 AMFE: -0.649 GC content %: 43.513 | |
| Tdicoccoides_TRIDC3BG037790.20 TRIDC3BG037790.20 |
High | No | 2222 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -28.609 AMFE: -0.709 GC content %: 40.324 | |
| Tdicoccoides_TRIDC3BG037790.24 TRIDC3BG037790.24 |
Low | Yes | 2676 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -28.412 AMFE: -0.710 GC content %: 40.022 | |
| Tdicoccoides_TRIDC3BG037790.25 TRIDC3BG037790.25 |
High | No | 1771 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -29.204 AMFE: -0.708 GC content %: 41.220 | |
| Tdicoccoides_TRIDC3BG037790.26 TRIDC3BG037790.26 |
Low | Yes | 1588 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -31.631 AMFE: -0.715 GC content %: 44.270 | |
| Tdicoccoides_TRIDC3BG037790.28 TRIDC3BG037790.28 |
High | No | 1169 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -31.805 AMFE: -0.702 GC content %: 45.338 | |
| Tdicoccoides_TRIDC3BG037790.29 TRIDC3BG037790.29 |
High | No | 1454 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -30.330 AMFE: -0.686 GC content %: 44.223 | |
| Tdicoccoides_TRIDC3BG037790.3 TRIDC3BG037790.3 |
Low | No | 1087 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -28.482 AMFE: -0.655 GC content %: 43.514 | |
| Tdicoccoides_TRIDC3BG037790.32 TRIDC3BG037790.32 |
High | No | 1747 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -29.599 AMFE: -0.705 GC content %: 41.958 | |
| Tdicoccoides_TRIDC3BG037790.33 TRIDC3BG037790.33 |
Low | Yes | 1453 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -31.081 AMFE: -0.698 GC content %: 44.529 | |
| Tdicoccoides_TRIDC3BG037790.35 TRIDC3BG037790.35 |
High | No | 1436 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -29.847 AMFE: -0.672 GC content %: 44.429 | |
| Tdicoccoides_TRIDC3BG037790.36 TRIDC3BG037790.36 |
High | No | 1280 | OG0000960 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -31.586 AMFE: -0.711 GC content %: 44.453 | |
| Tdicoccoides_TRIDC3BG037790.4 TRIDC3BG037790.4 |
High | No | 909 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -27.932 AMFE: -0.630 GC content %: 44.334 | |
| Tdicoccoides_TRIDC3BG037790.6 TRIDC3BG037790.6 |
Low | No | 1051 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -27.888 AMFE: -0.646 GC content %: 43.197 | |
| Tdicoccoides_TRIDC3BG037790.7 TRIDC3BG037790.7 |
Low | No | 556 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -30.198 AMFE: -0.638 GC content %: 47.302 | |
| Tdicoccoides_TRIDC3BG037790.9 TRIDC3BG037790.9 |
High | No | 918 | OG0004513 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -25.359 AMFE: -0.594 GC content %: 42.702 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG037790.14 | Rfam | 14.6 | MIR1122 | 1.1e-5 |
| Tdicoccoides_TRIDC3BG037790.3 | SwissProt | 2021-04-01 | Q67IX6 | 1.34e-8 |
| Tdicoccoides_TRIDC3BG037790.24 | Rfam | 14.6 | MIR1122 | 1.3e-5 |
| Tdicoccoides_TRIDC3BG037790.6 | SwissProt | 2021-04-01 | Q67IX6 | 1.46e-8 |
| Tdicoccoides_TRIDC3BG037790.26 | Rfam | 14.6 | MIR1122 | 8.0e-6 |
| Tdicoccoides_TRIDC3BG037790.7 | SwissProt | 2021-04-01 | Q67IX6 | 1.11e-9 |
| Tdicoccoides_TRIDC3BG037790.33 | Rfam | 14.6 | MIR1122 | 7.3e-6 |
| Tdicoccoides_TRIDC3BG037790.12 | Rfam | 14.6 | MIR1122 | 1.2e-5 |
| Tdicoccoides_TRIDC3BG037790.13 | Rfam | 14.6 | MIR1122 | 1.4e-5 |
| Tdicoccoides_TRIDC3BG037790.1 | SwissProt | 2021-04-01 | Q67IX6 | 8.39e-9 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
