Tdicoccoides TRIDC3BG038350
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG038350 [ TRIDC3BG038350] |
3B | 420592568 | 420597008 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG038350.1 TRIDC3BG038350.1 |
High | No | 1044 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -21.418 AMFE: -0.534 GC content %: 40.134 | |
| Tdicoccoides_TRIDC3BG038350.10 TRIDC3BG038350.10 |
High | No | 1586 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -21.885 AMFE: -0.536 GC content %: 40.794 | |
| Tdicoccoides_TRIDC3BG038350.11 TRIDC3BG038350.11 |
High | No | 1571 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -22.126 AMFE: -0.545 GC content %: 40.611 | |
| Tdicoccoides_TRIDC3BG038350.12 TRIDC3BG038350.12 |
High | No | 791 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -21.707 AMFE: -0.474 GC content %: 45.765 | |
| Tdicoccoides_TRIDC3BG038350.13 TRIDC3BG038350.13 |
High | No | 1400 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -21.607 AMFE: -0.544 GC content %: 39.714 | |
| Tdicoccoides_TRIDC3BG038350.14 TRIDC3BG038350.14 |
High | No | 1391 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -21.769 AMFE: -0.552 GC content %: 39.468 | |
| Tdicoccoides_TRIDC3BG038350.15 TRIDC3BG038350.15 |
High | No | 741 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -22.483 AMFE: -0.493 GC content %: 45.614 | |
| Tdicoccoides_TRIDC3BG038350.16 TRIDC3BG038350.16 |
High | No | 1587 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -21.727 AMFE: -0.553 GC content %: 39.256 | |
| Tdicoccoides_TRIDC3BG038350.17 TRIDC3BG038350.17 |
High | No | 1053 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -21.776 AMFE: -0.514 GC content %: 42.355 | |
| Tdicoccoides_TRIDC3BG038350.18 TRIDC3BG038350.18 |
High | No | 1096 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -22.117 AMFE: -0.518 GC content %: 42.701 | |
| Tdicoccoides_TRIDC3BG038350.19 TRIDC3BG038350.19 |
High | No | 1345 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -21.985 AMFE: -0.547 GC content %: 40.223 | |
| Tdicoccoides_TRIDC3BG038350.2 TRIDC3BG038350.2 |
High | No | 1298 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -22.604 AMFE: -0.532 GC content %: 42.450 | |
| Tdicoccoides_TRIDC3BG038350.20 TRIDC3BG038350.20 |
High | No | 222 | OG0061573 | Get ORF Coding potential... Type: noncoding Potential: -1.327 Folding energies... MFEI: -23.333 AMFE: -0.480 GC content %: 48.649 | |
| Tdicoccoides_TRIDC3BG038350.3 TRIDC3BG038350.3 |
High | No | 1840 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -22.332 AMFE: -0.554 GC content %: 40.326 | |
| Tdicoccoides_TRIDC3BG038350.4 TRIDC3BG038350.4 |
High | No | 1502 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -21.804 AMFE: -0.530 GC content %: 41.145 | |
| Tdicoccoides_TRIDC3BG038350.5 TRIDC3BG038350.5 |
High | No | 1479 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -22.157 AMFE: -0.528 GC content %: 41.988 | |
| Tdicoccoides_TRIDC3BG038350.6 TRIDC3BG038350.6 |
High | No | 1292 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -22.345 AMFE: -0.526 GC content %: 42.492 | |
| Tdicoccoides_TRIDC3BG038350.7 TRIDC3BG038350.7 |
High | No | 727 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -22.779 AMFE: -0.496 GC content %: 45.942 | |
| Tdicoccoides_TRIDC3BG038350.8 TRIDC3BG038350.8 |
High | No | 954 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -21.855 AMFE: -0.493 GC content %: 44.340 | |
| Tdicoccoides_TRIDC3BG038350.9 TRIDC3BG038350.9 |
High | No | 1746 | OG0000600 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -21.833 AMFE: -0.539 GC content %: 40.493 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
