Tdicoccoides TRIDC3BG042230
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG042230 [ TRIDC3BG042230] |
3B | 462709166 | 462716297 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG042230.1 TRIDC3BG042230.1 |
High | No | 708 | OG0009420 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -27.613 AMFE: -0.654 GC content %: 42.232 | |
| Tdicoccoides_TRIDC3BG042230.2 TRIDC3BG042230.2 |
High | No | 651 | OG0009420 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -27.204 AMFE: -0.607 GC content %: 44.854 | |
| Tdicoccoides_TRIDC3BG042230.3 TRIDC3BG042230.3 |
High | No | 750 | OG0009420 | Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -27.800 AMFE: -0.610 GC content %: 45.600 | |
| Tdicoccoides_TRIDC3BG042230.4 TRIDC3BG042230.4 |
High | No | 749 | OG0009420 | Get ORF Coding potential... Type: noncoding Potential: -0.580 Folding energies... MFEI: -27.330 AMFE: -0.600 GC content %: 45.527 | |
| Tdicoccoides_TRIDC3BG042230.6 TRIDC3BG042230.6 |
High | No | 603 | OG0009420 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -25.771 AMFE: -0.632 GC content %: 40.796 | |
| Tdicoccoides_TRIDC3BG042230.8 TRIDC3BG042230.8 |
High | No | 428 | OG0061880 | Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -25.374 AMFE: -0.610 GC content %: 41.589 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
