GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC3BG045570 [ TRIDC3BG045570]	3B	501536666	501542069	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC3BG045570.1 TRIDC3BG045570.1	High	No	1022	OG0359192		Get ORF Coding potential... Type: noncoding Potential: -1.345 Folding energies... MFEI: -28.816 AMFE: -0.601 GC content %: 47.945
Tdicoccoides_TRIDC3BG045570.15 TRIDC3BG045570.15	Low	No	1705	OG0025051		Get ORF Coding potential... Type: noncoding Potential: -0.432 Folding energies... MFEI: -28.639 AMFE: -0.642 GC content %: 44.575

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC3BG045570.15	SwissProt	2021-04-01	O82279	2.46e-11

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).