Tdicoccoides TRIDC3BG049150
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG049150 [ TRIDC3BG049150] |
3B | 540289373 | 540293140 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG049150.1 TRIDC3BG049150.1 |
High | No | 781 | OG0009422 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -32.945 AMFE: -0.651 GC content %: 50.576 | |
| Tdicoccoides_TRIDC3BG049150.10 TRIDC3BG049150.10 |
Low | No | 474 | OG0359239 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -28.861 AMFE: -0.625 GC content %: 46.203 | |
| Tdicoccoides_TRIDC3BG049150.11 TRIDC3BG049150.11 |
High | No | 697 | OG0009422 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -27.475 AMFE: -0.630 GC content %: 43.615 | |
| Tdicoccoides_TRIDC3BG049150.12 TRIDC3BG049150.12 |
High | No | 438 | OG0015295 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -28.059 AMFE: -0.600 GC content %: 46.804 | |
| Tdicoccoides_TRIDC3BG049150.2 TRIDC3BG049150.2 |
High | No | 301 | OG0359240 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -42.093 AMFE: -0.627 GC content %: 67.110 | |
| Tdicoccoides_TRIDC3BG049150.3 TRIDC3BG049150.3 |
High | No | 561 | OG0015295 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -28.734 AMFE: -0.584 GC content %: 49.198 | |
| Tdicoccoides_TRIDC3BG049150.4 TRIDC3BG049150.4 |
High | No | 634 | OG0015295 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -28.722 AMFE: -0.593 GC content %: 48.423 | |
| Tdicoccoides_TRIDC3BG049150.5 TRIDC3BG049150.5 |
High | No | 784 | OG0009422 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -28.099 AMFE: -0.610 GC content %: 46.046 | |
| Tdicoccoides_TRIDC3BG049150.6 TRIDC3BG049150.6 |
High | No | 598 | OG0015295 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -28.712 AMFE: -0.586 GC content %: 48.997 | |
| Tdicoccoides_TRIDC3BG049150.7 TRIDC3BG049150.7 |
High | No | 593 | OG0009422 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -30.135 AMFE: -0.638 GC content %: 47.218 | |
| Tdicoccoides_TRIDC3BG049150.8 TRIDC3BG049150.8 |
High | No | 620 | OG0061759 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -28.016 AMFE: -0.593 GC content %: 47.258 | |
| Tdicoccoides_TRIDC3BG049150.9 TRIDC3BG049150.9 |
High | No | 768 | OG0009422 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -27.839 AMFE: -0.618 GC content %: 45.052 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG049150.10 | SwissProt | 2021-04-01 | Q93ZJ3 | 3.39e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
