Tdicoccoides TRIDC3BG055780
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG055780 [ TRIDC3BG055780] |
3B | 599934718 | 599940297 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG055780.1 TRIDC3BG055780.1 |
Low | No | 1687 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -31.405 AMFE: -0.609 GC content %: 51.571 | |
| Tdicoccoides_TRIDC3BG055780.10 TRIDC3BG055780.10 |
Low | No | 2974 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.395 Folding energies... MFEI: -30.064 AMFE: -0.652 GC content %: 46.100 | |
| Tdicoccoides_TRIDC3BG055780.11 TRIDC3BG055780.11 |
Low | No | 2442 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.402 Folding energies... MFEI: -31.405 AMFE: -0.649 GC content %: 48.362 | |
| Tdicoccoides_TRIDC3BG055780.12 TRIDC3BG055780.12 |
Low | No | 1767 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.336 Folding energies... MFEI: -31.794 AMFE: -0.626 GC content %: 50.764 | |
| Tdicoccoides_TRIDC3BG055780.13 TRIDC3BG055780.13 |
Low | No | 1690 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -31.905 AMFE: -0.623 GC content %: 51.243 | |
| Tdicoccoides_TRIDC3BG055780.14 TRIDC3BG055780.14 |
Low | No | 2890 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.463 Folding energies... MFEI: -30.052 AMFE: -0.656 GC content %: 45.813 | |
| Tdicoccoides_TRIDC3BG055780.15 TRIDC3BG055780.15 |
Low | No | 2675 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -30.415 AMFE: -0.662 GC content %: 45.944 | |
| Tdicoccoides_TRIDC3BG055780.16 TRIDC3BG055780.16 |
Low | No | 1093 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.334 Folding energies... MFEI: -31.757 AMFE: -0.652 GC content %: 48.673 | |
| Tdicoccoides_TRIDC3BG055780.17 TRIDC3BG055780.17 |
Low | No | 1285 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -31.027 AMFE: -0.630 GC content %: 49.261 | |
| Tdicoccoides_TRIDC3BG055780.18 TRIDC3BG055780.18 |
Low | No | 1436 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.372 Folding energies... MFEI: -29.680 AMFE: -0.630 GC content %: 47.075 | |
| Tdicoccoides_TRIDC3BG055780.19 TRIDC3BG055780.19 |
Low | No | 2466 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.448 Folding energies... MFEI: -29.501 AMFE: -0.672 GC content %: 43.917 | |
| Tdicoccoides_TRIDC3BG055780.2 TRIDC3BG055780.2 |
Low | No | 1949 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.324 Folding energies... MFEI: -29.723 AMFE: -0.600 GC content %: 49.513 | |
| Tdicoccoides_TRIDC3BG055780.20 TRIDC3BG055780.20 |
Low | No | 1338 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -29.342 AMFE: -0.623 GC content %: 47.085 | |
| Tdicoccoides_TRIDC3BG055780.21 TRIDC3BG055780.21 |
Low | No | 1668 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.348 Folding energies... MFEI: -29.946 AMFE: -0.652 GC content %: 45.923 | |
| Tdicoccoides_TRIDC3BG055780.22 TRIDC3BG055780.22 |
Low | No | 1005 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.319 Folding energies... MFEI: -29.483 AMFE: -0.606 GC content %: 48.657 | |
| Tdicoccoides_TRIDC3BG055780.23 TRIDC3BG055780.23 |
Low | No | 2687 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -28.623 AMFE: -0.666 GC content %: 42.985 | |
| Tdicoccoides_TRIDC3BG055780.24 TRIDC3BG055780.24 |
Low | No | 1347 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -29.837 AMFE: -0.637 GC content %: 46.845 | |
| Tdicoccoides_TRIDC3BG055780.25 TRIDC3BG055780.25 |
Low | No | 1755 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -29.709 AMFE: -0.661 GC content %: 44.957 | |
| Tdicoccoides_TRIDC3BG055780.26 TRIDC3BG055780.26 |
Low | No | 2476 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -28.409 AMFE: -0.662 GC content %: 42.932 | |
| Tdicoccoides_TRIDC3BG055780.27 TRIDC3BG055780.27 |
Low | No | 1616 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.408 Folding energies... MFEI: -28.007 AMFE: -0.627 GC content %: 44.678 | |
| Tdicoccoides_TRIDC3BG055780.28 TRIDC3BG055780.28 |
Low | No | 1110 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.371 Folding energies... MFEI: -31.063 AMFE: -0.644 GC content %: 48.198 | |
| Tdicoccoides_TRIDC3BG055780.29 TRIDC3BG055780.29 |
Low | No | 994 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.044 Folding energies... MFEI: -31.087 AMFE: -0.633 GC content %: 49.095 | |
| Tdicoccoides_TRIDC3BG055780.3 TRIDC3BG055780.3 |
Low | No | 3030 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -29.634 AMFE: -0.645 GC content %: 45.941 | |
| Tdicoccoides_TRIDC3BG055780.30 TRIDC3BG055780.30 |
Low | No | 1216 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.239 Folding energies... MFEI: -29.910 AMFE: -0.637 GC content %: 46.957 | |
| Tdicoccoides_TRIDC3BG055780.31 TRIDC3BG055780.31 |
Low | No | 1611 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.408 Folding energies... MFEI: -28.895 AMFE: -0.643 GC content %: 44.941 | |
| Tdicoccoides_TRIDC3BG055780.32 TRIDC3BG055780.32 |
Low | No | 1839 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.415 Folding energies... MFEI: -28.146 AMFE: -0.644 GC content %: 43.719 | |
| Tdicoccoides_TRIDC3BG055780.33 TRIDC3BG055780.33 |
Low | No | 1958 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -25.889 AMFE: -0.614 GC content %: 42.135 | |
| Tdicoccoides_TRIDC3BG055780.34 TRIDC3BG055780.34 |
Low | No | 1459 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.393 Folding energies... MFEI: -28.698 AMFE: -0.645 GC content %: 44.483 | |
| Tdicoccoides_TRIDC3BG055780.35 TRIDC3BG055780.35 |
Low | No | 2253 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -28.633 AMFE: -0.671 GC content %: 42.654 | |
| Tdicoccoides_TRIDC3BG055780.36 TRIDC3BG055780.36 |
Low | No | 1265 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -29.091 AMFE: -0.636 GC content %: 45.771 | |
| Tdicoccoides_TRIDC3BG055780.37 TRIDC3BG055780.37 |
Low | No | 1075 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -28.763 AMFE: -0.664 GC content %: 43.349 | |
| Tdicoccoides_TRIDC3BG055780.38 TRIDC3BG055780.38 |
Low | No | 928 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.261 Folding energies... MFEI: -31.078 AMFE: -0.651 GC content %: 47.737 | |
| Tdicoccoides_TRIDC3BG055780.39 TRIDC3BG055780.39 |
Low | No | 2284 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.472 Folding energies... MFEI: -28.884 AMFE: -0.675 GC content %: 42.776 | |
| Tdicoccoides_TRIDC3BG055780.4 TRIDC3BG055780.4 |
Low | No | 1660 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -31.753 AMFE: -0.614 GC content %: 51.687 | |
| Tdicoccoides_TRIDC3BG055780.40 TRIDC3BG055780.40 |
Low | No | 2505 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -28.216 AMFE: -0.664 GC content %: 42.475 | |
| Tdicoccoides_TRIDC3BG055780.41 TRIDC3BG055780.41 |
Low | No | 2473 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -28.399 AMFE: -0.669 GC content %: 42.418 | |
| Tdicoccoides_TRIDC3BG055780.5 TRIDC3BG055780.5 |
Low | No | 2541 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.373 Folding energies... MFEI: -29.831 AMFE: -0.641 GC content %: 46.517 | |
| Tdicoccoides_TRIDC3BG055780.6 TRIDC3BG055780.6 |
Low | No | 1984 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.391 Folding energies... MFEI: -31.381 AMFE: -0.633 GC content %: 49.597 | |
| Tdicoccoides_TRIDC3BG055780.7 TRIDC3BG055780.7 |
Low | No | 1118 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -32.925 AMFE: -0.617 GC content %: 53.399 | |
| Tdicoccoides_TRIDC3BG055780.8 TRIDC3BG055780.8 |
Low | No | 2628 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -30.049 AMFE: -0.661 GC content %: 45.472 | |
| Tdicoccoides_TRIDC3BG055780.9 TRIDC3BG055780.9 |
Low | No | 1874 | OG0000072 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -32.044 AMFE: -0.636 GC content %: 50.374 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG055780.41 | SwissProt | 2021-04-01 | F4KIA8 | 1.04e-12 |
| Tdicoccoides_TRIDC3BG055780.12 | SwissProt | 2021-04-01 | F4KIA8 | 5.63e-13 |
| Tdicoccoides_TRIDC3BG055780.27 | SwissProt | 2021-04-01 | F4KIA8 | 4.59e-13 |
| Tdicoccoides_TRIDC3BG055780.37 | SwissProt | 2021-04-01 | F4KIA8 | 1.69e-14 |
| Tdicoccoides_TRIDC3BG055780.22 | SwissProt | 2021-04-01 | F4KIA8 | 9.02e-14 |
| Tdicoccoides_TRIDC3BG055780.32 | SwissProt | 2021-04-01 | F4KIA8 | 6.1e-13 |
| Tdicoccoides_TRIDC3BG055780.18 | SwissProt | 2021-04-01 | F4KIA8 | 3.37e-13 |
| Tdicoccoides_TRIDC3BG055780.28 | SwissProt | 2021-04-01 | F4KIA8 | 1.39e-13 |
| Tdicoccoides_TRIDC3BG055780.5 | SwissProt | 2021-04-01 | F4KIA8 | 1.85e-12 |
| Tdicoccoides_TRIDC3BG055780.13 | SwissProt | 2021-04-01 | F4KIA8 | 5.1e-13 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
