Tdicoccoides TRIDC3BG059380
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG059380 [ TRIDC3BG059380] |
3B | 641014229 | 641018729 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG059380.1 TRIDC3BG059380.1 |
High | No | 1552 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -27.101 AMFE: -0.664 GC content %: 40.786 | |
| Tdicoccoides_TRIDC3BG059380.10 TRIDC3BG059380.10 |
Low | No | 2755 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -28.229 AMFE: -0.671 GC content %: 42.069 | |
| Tdicoccoides_TRIDC3BG059380.11 TRIDC3BG059380.11 |
High | No | 2289 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -29.353 AMFE: -0.674 GC content %: 43.556 | |
| Tdicoccoides_TRIDC3BG059380.12 TRIDC3BG059380.12 |
High | No | 1687 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -26.752 AMFE: -0.656 GC content %: 40.782 | |
| Tdicoccoides_TRIDC3BG059380.13 TRIDC3BG059380.13 |
Low | No | 2048 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.116 AMFE: -0.672 GC content %: 43.359 | |
| Tdicoccoides_TRIDC3BG059380.14 TRIDC3BG059380.14 |
Low | No | 2270 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -27.731 AMFE: -0.668 GC content %: 41.542 | |
| Tdicoccoides_TRIDC3BG059380.15 TRIDC3BG059380.15 |
Low | No | 2188 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -27.948 AMFE: -0.668 GC content %: 41.819 | |
| Tdicoccoides_TRIDC3BG059380.16 TRIDC3BG059380.16 |
Low | No | 1700 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -25.329 AMFE: -0.644 GC content %: 39.353 | |
| Tdicoccoides_TRIDC3BG059380.17 TRIDC3BG059380.17 |
High | No | 1956 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -28.926 AMFE: -0.672 GC content %: 43.047 | |
| Tdicoccoides_TRIDC3BG059380.18 TRIDC3BG059380.18 |
Low | No | 1670 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -28.533 AMFE: -0.662 GC content %: 43.114 | |
| Tdicoccoides_TRIDC3BG059380.19 TRIDC3BG059380.19 |
High | No | 1068 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -27.378 AMFE: -0.657 GC content %: 41.667 | |
| Tdicoccoides_TRIDC3BG059380.2 TRIDC3BG059380.2 |
High | No | 1520 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -29.263 AMFE: -0.667 GC content %: 43.882 | |
| Tdicoccoides_TRIDC3BG059380.20 TRIDC3BG059380.20 |
High | No | 1570 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.987 AMFE: -0.666 GC content %: 45.032 | |
| Tdicoccoides_TRIDC3BG059380.3 TRIDC3BG059380.3 |
Low | No | 1691 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -25.151 AMFE: -0.639 GC content %: 39.385 | |
| Tdicoccoides_TRIDC3BG059380.4 TRIDC3BG059380.4 |
High | No | 1365 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -26.828 AMFE: -0.655 GC content %: 40.952 | |
| Tdicoccoides_TRIDC3BG059380.5 TRIDC3BG059380.5 |
Low | No | 2862 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -27.704 AMFE: -0.663 GC content %: 41.789 | |
| Tdicoccoides_TRIDC3BG059380.6 TRIDC3BG059380.6 |
High | No | 2014 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -28.793 AMFE: -0.667 GC content %: 43.198 | |
| Tdicoccoides_TRIDC3BG059380.7 TRIDC3BG059380.7 |
Low | No | 1786 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -29.552 AMFE: -0.667 GC content %: 44.289 | |
| Tdicoccoides_TRIDC3BG059380.8 TRIDC3BG059380.8 |
High | No | 1071 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -27.806 AMFE: -0.666 GC content %: 41.737 | |
| Tdicoccoides_TRIDC3BG059380.9 TRIDC3BG059380.9 |
Low | No | 1735 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -28.784 AMFE: -0.669 GC content %: 42.997 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG059380.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC3BG059380.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
