Tdicoccoides TRIDC3BG061120
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG061120 [ TRIDC3BG061120] |
3B | 659897125 | 659921478 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG061120.1 TRIDC3BG061120.1 |
Low | No | 1448 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -28.653 AMFE: -0.655 GC content %: 43.715 | |
| Tdicoccoides_TRIDC3BG061120.10 TRIDC3BG061120.10 |
Low | No | 1292 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -29.938 AMFE: -0.668 GC content %: 44.814 | |
| Tdicoccoides_TRIDC3BG061120.11 TRIDC3BG061120.11 |
Low | No | 1371 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -29.344 AMFE: -0.662 GC content %: 44.347 | |
| Tdicoccoides_TRIDC3BG061120.12 TRIDC3BG061120.12 |
Low | No | 1171 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -30.282 AMFE: -0.667 GC content %: 45.431 | |
| Tdicoccoides_TRIDC3BG061120.17 TRIDC3BG061120.17 |
High | No | 580 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -31.517 AMFE: -0.682 GC content %: 46.207 | |
| Tdicoccoides_TRIDC3BG061120.2 TRIDC3BG061120.2 |
Low | No | 1431 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -28.442 AMFE: -0.649 GC content %: 43.816 | |
| Tdicoccoides_TRIDC3BG061120.3 TRIDC3BG061120.3 |
Low | No | 1411 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -28.320 AMFE: -0.648 GC content %: 43.728 | |
| Tdicoccoides_TRIDC3BG061120.4 TRIDC3BG061120.4 |
Low | No | 1343 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -28.258 AMFE: -0.635 GC content %: 44.527 | |
| Tdicoccoides_TRIDC3BG061120.5 TRIDC3BG061120.5 |
Low | No | 1449 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -29.641 AMFE: -0.662 GC content %: 44.790 | |
| Tdicoccoides_TRIDC3BG061120.6 TRIDC3BG061120.6 |
Low | No | 1327 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -28.885 AMFE: -0.652 GC content %: 44.310 | |
| Tdicoccoides_TRIDC3BG061120.7 TRIDC3BG061120.7 |
Low | No | 1468 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -28.774 AMFE: -0.656 GC content %: 43.869 | |
| Tdicoccoides_TRIDC3BG061120.8 TRIDC3BG061120.8 |
Low | No | 1557 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -28.298 AMFE: -0.646 GC content %: 43.802 | |
| Tdicoccoides_TRIDC3BG061120.9 TRIDC3BG061120.9 |
Low | No | 1174 | OG0001251 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -29.940 AMFE: -0.670 GC content %: 44.719 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG061120.4 | SwissProt | 2021-04-01 | Q9SB58 | 2.16e-6 |
| Tdicoccoides_TRIDC3BG061120.10 | SwissProt | 2021-04-01 | Q9SB58 | 2.02e-6 |
| Tdicoccoides_TRIDC3BG061120.5 | SwissProt | 2021-04-01 | Q9SB58 | 2.46e-6 |
| Tdicoccoides_TRIDC3BG061120.11 | SwissProt | 2021-04-01 | Q9SB58 | 2.25e-6 |
| Tdicoccoides_TRIDC3BG061120.6 | SwissProt | 2021-04-01 | Q9SB58 | 2.12e-6 |
| Tdicoccoides_TRIDC3BG061120.12 | SwissProt | 2021-04-01 | Q9SB58 | 1.68e-6 |
| Tdicoccoides_TRIDC3BG061120.7 | SwissProt | 2021-04-01 | Q9SB58 | 2.52e-6 |
| Tdicoccoides_TRIDC3BG061120.2 | SwissProt | 2021-04-01 | Q9SB58 | 2.42e-6 |
| Tdicoccoides_TRIDC3BG061120.8 | SwissProt | 2021-04-01 | Q9SB58 | 2.76e-6 |
| Tdicoccoides_TRIDC3BG061120.3 | SwissProt | 2021-04-01 | Q9SB58 | 2.36e-6 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
