Tdicoccoides TRIDC3BG062520
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG062520 [ TRIDC3BG062520] |
3B | 672555067 | 672556795 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG062520.1 TRIDC3BG062520.1 |
High | No | 1089 | OG0009427 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -27.576 AMFE: -0.672 GC content %: 41.047 | |
| Tdicoccoides_TRIDC3BG062520.2 TRIDC3BG062520.2 |
High | No | 453 | OG0009427 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -24.989 AMFE: -0.625 GC content %: 39.956 | |
| Tdicoccoides_TRIDC3BG062520.3 TRIDC3BG062520.3 |
High | No | 577 | OG0009427 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -28.354 AMFE: -0.679 GC content %: 41.768 | |
| Tdicoccoides_TRIDC3BG062520.4 TRIDC3BG062520.4 |
High | No | 598 | OG0009427 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -26.505 AMFE: -0.617 GC content %: 42.977 | |
| Tdicoccoides_TRIDC3BG062520.5 TRIDC3BG062520.5 |
High | No | 582 | OG0009427 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -27.818 AMFE: -0.677 GC content %: 41.065 | |
| Tdicoccoides_TRIDC3BG062520.6 TRIDC3BG062520.6 |
High | No | 432 | OG0061904 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -24.560 AMFE: -0.580 GC content %: 42.361 | |
| Tdicoccoides_TRIDC3BG062520.7 TRIDC3BG062520.7 |
High | No | 404 | OG0061904 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -25.396 AMFE: -0.604 GC content %: 42.079 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
