Tdicoccoides TRIDC3BG077470
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG077470 [ TRIDC3BG077470] |
3B | 785307769 | 785311674 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG077470.10 TRIDC3BG077470.10 |
High | No | 1543 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -28.036 AMFE: -0.672 GC content %: 41.737 | |
| Tdicoccoides_TRIDC3BG077470.11 TRIDC3BG077470.11 |
High | No | 1168 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.442 AMFE: -0.679 GC content %: 41.866 | |
| Tdicoccoides_TRIDC3BG077470.13 TRIDC3BG077470.13 |
High | No | 2461 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -25.250 AMFE: -0.655 GC content %: 38.521 | |
| Tdicoccoides_TRIDC3BG077470.14 TRIDC3BG077470.14 |
High | No | 2340 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -25.077 AMFE: -0.662 GC content %: 37.906 | |
| Tdicoccoides_TRIDC3BG077470.15 TRIDC3BG077470.15 |
High | No | 1922 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -25.062 AMFE: -0.646 GC content %: 38.814 | |
| Tdicoccoides_TRIDC3BG077470.16 TRIDC3BG077470.16 |
High | No | 2183 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -24.567 AMFE: -0.652 GC content %: 37.655 | |
| Tdicoccoides_TRIDC3BG077470.2 TRIDC3BG077470.2 |
High | No | 2683 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -27.227 AMFE: -0.673 GC content %: 40.477 | |
| Tdicoccoides_TRIDC3BG077470.4 TRIDC3BG077470.4 |
High | No | 2472 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.035 AMFE: -0.656 GC content %: 41.222 | |
| Tdicoccoides_TRIDC3BG077470.9 TRIDC3BG077470.9 |
High | No | 1229 | OG0002784 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -28.381 AMFE: -0.661 GC content %: 42.962 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
