Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC3BG082900 [ TRIDC3BG082900] |
3B | 818073059 | 818076363 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC3BG082900.1 TRIDC3BG082900.1 |
High | No | 323 | OG0009432 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -41.920 AMFE: -0.604 GC content %: 69.350 | |
Tdicoccoides_TRIDC3BG082900.2 TRIDC3BG082900.2 |
High | No | 1770 | OG0009432 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -29.282 AMFE: -0.642 GC content %: 45.593 | |
Tdicoccoides_TRIDC3BG082900.3 TRIDC3BG082900.3 |
High | No | 1135 | OG0009432 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -34.106 AMFE: -0.680 GC content %: 50.132 | |
Tdicoccoides_TRIDC3BG082900.4 TRIDC3BG082900.4 |
High | No | 1832 | OG0009432 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -29.563 AMFE: -0.648 GC content %: 45.633 | |
Tdicoccoides_TRIDC3BG082900.5 TRIDC3BG082900.5 |
High | No | 2758 | OG0009432 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -28.716 AMFE: -0.678 GC content %: 42.386 | |
Tdicoccoides_TRIDC3BG082900.6 TRIDC3BG082900.6 |
High | No | 345 | OG0359666 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -26.116 AMFE: -0.667 GC content %: 39.130 | |
Tdicoccoides_TRIDC3BG082900.7 TRIDC3BG082900.7 |
High | No | 346 | OG0359667 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -25.462 AMFE: -0.657 GC content %: 38.728 | |
Tdicoccoides_TRIDC3BG082900.8 TRIDC3BG082900.8 |
Low | No | 480 | OG0015212 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -24.229 AMFE: -0.672 GC content %: 36.042 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC3BG082900.8 | SwissProt | 2021-04-01 | Q53FV1 | 2.04e-4 |