Tdicoccoides TRIDC4AG001540
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG001540 [ TRIDC4AG001540] |
4A | 7157163 | 7160041 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG001540.1 TRIDC4AG001540.1 |
Low | No | 749 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -27.290 AMFE: -0.637 GC content %: 42.857 | |
| Tdicoccoides_TRIDC4AG001540.10 TRIDC4AG001540.10 |
Low | No | 1442 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -26.671 AMFE: -0.642 GC content %: 41.540 | |
| Tdicoccoides_TRIDC4AG001540.14 TRIDC4AG001540.14 |
Low | No | 1445 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -26.720 AMFE: -0.650 GC content %: 41.107 | |
| Tdicoccoides_TRIDC4AG001540.15 TRIDC4AG001540.15 |
Low | No | 818 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.759 Folding energies... MFEI: -27.433 AMFE: -0.656 GC content %: 41.809 | |
| Tdicoccoides_TRIDC4AG001540.16 TRIDC4AG001540.16 |
Low | No | 583 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -24.271 AMFE: -0.621 GC content %: 39.108 | |
| Tdicoccoides_TRIDC4AG001540.3 TRIDC4AG001540.3 |
Low | No | 1381 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -27.654 AMFE: -0.649 GC content %: 42.578 | |
| Tdicoccoides_TRIDC4AG001540.4 TRIDC4AG001540.4 |
Low | No | 1322 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -27.307 AMFE: -0.640 GC content %: 42.663 | |
| Tdicoccoides_TRIDC4AG001540.6 TRIDC4AG001540.6 |
Low | No | 1199 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -27.748 AMFE: -0.631 GC content %: 43.953 | |
| Tdicoccoides_TRIDC4AG001540.8 TRIDC4AG001540.8 |
Low | No | 1209 | OG0001907 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -26.931 AMFE: -0.655 GC content %: 41.108 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG001540.1 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC4AG001540.16 | SwissProt | 2021-04-01 | O34376 | 9.59e-5 |
| Tdicoccoides_TRIDC4AG001540.8 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC4AG001540.10 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC4AG001540.3 | SwissProt | 2021-04-01 | O34376 | 3.79e-4 |
| Tdicoccoides_TRIDC4AG001540.14 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC4AG001540.4 | SwissProt | 2021-04-01 | O34376 | 3.8e-4 |
| Tdicoccoides_TRIDC4AG001540.10 | SwissProt | 2021-04-01 | O34376 | 4.41e-4 |
| Tdicoccoides_TRIDC4AG001540.3 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC4AG001540.6 | SwissProt | 2021-04-01 | O34376 | 3.38e-4 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
