GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC4AG003550 [ TRIDC4AG003550]	4A	18111301	18167195	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC4AG003550.2 TRIDC4AG003550.2	High	No	469	OG0061953		Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -35.778 AMFE: -0.608 GC content %: 58.849
Tdicoccoides_TRIDC4AG003550.3 TRIDC4AG003550.3	High	No	682	OG0061953		Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -32.903 AMFE: -0.623 GC content %: 52.786
Tdicoccoides_TRIDC4AG003550.6 TRIDC4AG003550.6	High	No	290	OG0359794		Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -24.207 AMFE: -0.553 GC content %: 43.793

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).