Tdicoccoides TRIDC4AG006430
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG006430 [ TRIDC4AG006430] |
4A | 38047862 | 38055743 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG006430.1 TRIDC4AG006430.1 |
Low | No | 2920 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -27.490 AMFE: -0.665 GC content %: 41.336 | |
| Tdicoccoides_TRIDC4AG006430.10 TRIDC4AG006430.10 |
Low | No | 3253 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -27.864 AMFE: -0.662 GC content %: 42.115 | |
| Tdicoccoides_TRIDC4AG006430.11 TRIDC4AG006430.11 |
Low | No | 3506 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -27.145 AMFE: -0.662 GC content %: 41.015 | |
| Tdicoccoides_TRIDC4AG006430.12 TRIDC4AG006430.12 |
Low | No | 3008 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -27.580 AMFE: -0.659 GC content %: 41.822 | |
| Tdicoccoides_TRIDC4AG006430.13 TRIDC4AG006430.13 |
Low | No | 3388 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.877 AMFE: -0.664 GC content %: 40.466 | |
| Tdicoccoides_TRIDC4AG006430.14 TRIDC4AG006430.14 |
Low | No | 2938 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -27.379 AMFE: -0.653 GC content %: 41.933 | |
| Tdicoccoides_TRIDC4AG006430.15 TRIDC4AG006430.15 |
Low | No | 3187 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -27.320 AMFE: -0.666 GC content %: 41.042 | |
| Tdicoccoides_TRIDC4AG006430.16 TRIDC4AG006430.16 |
Low | No | 3350 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -27.421 AMFE: -0.666 GC content %: 41.164 | |
| Tdicoccoides_TRIDC4AG006430.17 TRIDC4AG006430.17 |
Low | No | 2733 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -27.680 AMFE: -0.656 GC content %: 42.225 | |
| Tdicoccoides_TRIDC4AG006430.18 TRIDC4AG006430.18 |
Low | No | 3917 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.199 Folding energies... MFEI: -27.092 AMFE: -0.670 GC content %: 40.465 | |
| Tdicoccoides_TRIDC4AG006430.2 TRIDC4AG006430.2 |
Low | No | 3334 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -27.439 AMFE: -0.666 GC content %: 41.212 | |
| Tdicoccoides_TRIDC4AG006430.20 TRIDC4AG006430.20 |
Low | No | 3552 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -26.698 AMFE: -0.665 GC content %: 40.175 | |
| Tdicoccoides_TRIDC4AG006430.22 TRIDC4AG006430.22 |
Low | No | 3712 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.192 Folding energies... MFEI: -26.676 AMFE: -0.661 GC content %: 40.329 | |
| Tdicoccoides_TRIDC4AG006430.23 TRIDC4AG006430.23 |
Low | No | 2468 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -27.946 AMFE: -0.641 GC content %: 43.598 | |
| Tdicoccoides_TRIDC4AG006430.24 TRIDC4AG006430.24 |
Low | No | 2810 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -27.495 AMFE: -0.654 GC content %: 42.064 | |
| Tdicoccoides_TRIDC4AG006430.25 TRIDC4AG006430.25 |
Low | No | 3142 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -27.626 AMFE: -0.658 GC content %: 41.980 | |
| Tdicoccoides_TRIDC4AG006430.26 TRIDC4AG006430.26 |
Low | No | 2487 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -27.994 AMFE: -0.656 GC content %: 42.662 | |
| Tdicoccoides_TRIDC4AG006430.27 TRIDC4AG006430.27 |
Low | No | 3741 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.036 Folding energies... MFEI: -26.442 AMFE: -0.660 GC content %: 40.043 | |
| Tdicoccoides_TRIDC4AG006430.28 TRIDC4AG006430.28 |
Low | No | 2655 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -27.751 AMFE: -0.657 GC content %: 42.260 | |
| Tdicoccoides_TRIDC4AG006430.29 TRIDC4AG006430.29 |
Low | No | 4203 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.061 Folding energies... MFEI: -26.952 AMFE: -0.672 GC content %: 40.090 | |
| Tdicoccoides_TRIDC4AG006430.3 TRIDC4AG006430.3 |
Low | No | 3557 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.190 Folding energies... MFEI: -27.006 AMFE: -0.663 GC content %: 40.708 | |
| Tdicoccoides_TRIDC4AG006430.30 TRIDC4AG006430.30 |
Low | No | 3792 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -26.917 AMFE: -0.665 GC content %: 40.506 | |
| Tdicoccoides_TRIDC4AG006430.31 TRIDC4AG006430.31 |
Low | No | 3134 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -27.109 AMFE: -0.651 GC content %: 41.672 | |
| Tdicoccoides_TRIDC4AG006430.33 TRIDC4AG006430.33 |
Low | No | 3969 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -27.216 AMFE: -0.675 GC content %: 40.338 | |
| Tdicoccoides_TRIDC4AG006430.35 TRIDC4AG006430.35 |
Low | No | 3388 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -27.370 AMFE: -0.667 GC content %: 41.057 | |
| Tdicoccoides_TRIDC4AG006430.36 TRIDC4AG006430.36 |
Low | No | 3813 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.199 Folding energies... MFEI: -26.706 AMFE: -0.679 GC content %: 39.339 | |
| Tdicoccoides_TRIDC4AG006430.37 TRIDC4AG006430.37 |
Low | No | 3553 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -26.350 AMFE: -0.661 GC content %: 39.854 | |
| Tdicoccoides_TRIDC4AG006430.38 TRIDC4AG006430.38 |
Low | No | 2895 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -26.446 AMFE: -0.669 GC content %: 39.551 | |
| Tdicoccoides_TRIDC4AG006430.39 TRIDC4AG006430.39 |
Low | No | 2458 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -26.664 AMFE: -0.655 GC content %: 40.683 | |
| Tdicoccoides_TRIDC4AG006430.4 TRIDC4AG006430.4 |
Low | No | 3771 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -27.086 AMFE: -0.664 GC content %: 40.811 | |
| Tdicoccoides_TRIDC4AG006430.40 TRIDC4AG006430.40 |
Low | No | 1849 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -25.987 AMFE: -0.638 GC content %: 40.725 | |
| Tdicoccoides_TRIDC4AG006430.41 TRIDC4AG006430.41 |
Low | No | 1911 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.311 Folding energies... MFEI: -26.436 AMFE: -0.643 GC content %: 41.130 | |
| Tdicoccoides_TRIDC4AG006430.42 TRIDC4AG006430.42 |
Low | No | 2885 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -26.191 AMFE: -0.640 GC content %: 40.936 | |
| Tdicoccoides_TRIDC4AG006430.43 TRIDC4AG006430.43 |
Low | No | 2696 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -27.274 AMFE: -0.651 GC content %: 41.914 | |
| Tdicoccoides_TRIDC4AG006430.44 TRIDC4AG006430.44 |
Low | No | 2711 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -26.732 AMFE: -0.650 GC content %: 41.129 | |
| Tdicoccoides_TRIDC4AG006430.45 TRIDC4AG006430.45 |
Low | No | 3250 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -25.828 AMFE: -0.654 GC content %: 39.477 | |
| Tdicoccoides_TRIDC4AG006430.46 TRIDC4AG006430.46 |
Low | No | 3617 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -26.165 AMFE: -0.656 GC content %: 39.867 | |
| Tdicoccoides_TRIDC4AG006430.47 TRIDC4AG006430.47 |
Low | No | 2739 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -26.039 AMFE: -0.641 GC content %: 40.599 | |
| Tdicoccoides_TRIDC4AG006430.48 TRIDC4AG006430.48 |
Low | No | 2933 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -25.762 AMFE: -0.633 GC content %: 40.675 | |
| Tdicoccoides_TRIDC4AG006430.49 TRIDC4AG006430.49 |
Low | No | 2691 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -25.702 AMFE: -0.641 GC content %: 40.097 | |
| Tdicoccoides_TRIDC4AG006430.5 TRIDC4AG006430.5 |
Low | No | 3536 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -27.452 AMFE: -0.668 GC content %: 41.092 | |
| Tdicoccoides_TRIDC4AG006430.50 TRIDC4AG006430.50 |
Low | No | 2315 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -25.814 AMFE: -0.622 GC content %: 41.512 | |
| Tdicoccoides_TRIDC4AG006430.51 TRIDC4AG006430.51 |
Low | No | 2751 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -25.903 AMFE: -0.640 GC content %: 40.494 | |
| Tdicoccoides_TRIDC4AG006430.52 TRIDC4AG006430.52 |
Low | No | 2329 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -25.844 AMFE: -0.643 GC content %: 40.189 | |
| Tdicoccoides_TRIDC4AG006430.53 TRIDC4AG006430.53 |
Low | No | 3329 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -25.734 AMFE: -0.660 GC content %: 38.991 | |
| Tdicoccoides_TRIDC4AG006430.6 TRIDC4AG006430.6 |
Low | No | 3774 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -27.326 AMFE: -0.670 GC content %: 40.779 | |
| Tdicoccoides_TRIDC4AG006430.7 TRIDC4AG006430.7 |
Low | No | 2125 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -28.475 AMFE: -0.653 GC content %: 43.576 | |
| Tdicoccoides_TRIDC4AG006430.9 TRIDC4AG006430.9 |
Low | No | 3874 | OG0000042 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -27.537 AMFE: -0.666 GC content %: 41.327 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG006430.46 | SwissProt | 2021-04-01 | Q0JCZ4 | 3.15e-8 |
| Tdicoccoides_TRIDC4AG006430.13 | SwissProt | 2021-04-01 | Q9FZ97 | 1.84e-7 |
| Tdicoccoides_TRIDC4AG006430.3 | SwissProt | 2021-04-01 | Q9FZ97 | 4.19e-16 |
| Tdicoccoides_TRIDC4AG006430.9 | SwissProt | 2021-04-01 | Q0JCZ4 | 3.42e-8 |
| Tdicoccoides_TRIDC4AG006430.25 | SwissProt | 2021-04-01 | Q0JCZ4 | 2.63e-8 |
| Tdicoccoides_TRIDC4AG006430.41 | SwissProt | 2021-04-01 | Q9FZ97 | 6.77e-15 |
| Tdicoccoides_TRIDC4AG006430.51 | SwissProt | 2021-04-01 | Q9FZ97 | 1.81e-7 |
| Tdicoccoides_TRIDC4AG006430.2 | SwissProt | 2021-04-01 | Q9FZ97 | 1.81e-7 |
| Tdicoccoides_TRIDC4AG006430.37 | SwissProt | 2021-04-01 | Q9FZ97 | 2.45e-15 |
| Tdicoccoides_TRIDC4AG006430.47 | SwissProt | 2021-04-01 | Q0JCZ4 | 2.19e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
