Tdicoccoides TRIDC4AG012800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG012800 [ TRIDC4AG012800] |
4A | 102235419 | 102239520 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG012800.1 TRIDC4AG012800.1 |
High | No | 2844 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -28.108 AMFE: -0.671 GC content %: 41.913 | |
| Tdicoccoides_TRIDC4AG012800.10 TRIDC4AG012800.10 |
High | No | 1984 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -27.253 AMFE: -0.635 GC content %: 42.944 | |
| Tdicoccoides_TRIDC4AG012800.11 TRIDC4AG012800.11 |
High | No | 2183 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -26.830 AMFE: -0.642 GC content %: 41.777 | |
| Tdicoccoides_TRIDC4AG012800.12 TRIDC4AG012800.12 |
High | No | 2189 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -27.570 AMFE: -0.649 GC content %: 42.485 | |
| Tdicoccoides_TRIDC4AG012800.15 TRIDC4AG012800.15 |
High | No | 2024 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -28.043 AMFE: -0.656 GC content %: 42.737 | |
| Tdicoccoides_TRIDC4AG012800.16 TRIDC4AG012800.16 |
High | No | 1590 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -25.409 AMFE: -0.658 GC content %: 38.616 | |
| Tdicoccoides_TRIDC4AG012800.17 TRIDC4AG012800.17 |
High | No | 2021 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -27.625 AMFE: -0.649 GC content %: 42.553 | |
| Tdicoccoides_TRIDC4AG012800.18 TRIDC4AG012800.18 |
High | No | 2921 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -28.155 AMFE: -0.666 GC content %: 42.280 | |
| Tdicoccoides_TRIDC4AG012800.19 TRIDC4AG012800.19 |
High | No | 3559 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -26.982 AMFE: -0.669 GC content %: 40.320 | |
| Tdicoccoides_TRIDC4AG012800.2 TRIDC4AG012800.2 |
High | No | 3050 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -27.597 AMFE: -0.655 GC content %: 42.131 | |
| Tdicoccoides_TRIDC4AG012800.20 TRIDC4AG012800.20 |
High | No | 3164 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -27.269 AMFE: -0.668 GC content %: 40.803 | |
| Tdicoccoides_TRIDC4AG012800.22 TRIDC4AG012800.22 |
High | No | 1966 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -27.645 AMFE: -0.652 GC content %: 42.421 | |
| Tdicoccoides_TRIDC4AG012800.23 TRIDC4AG012800.23 |
High | No | 2772 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -28.084 AMFE: -0.665 GC content %: 42.244 | |
| Tdicoccoides_TRIDC4AG012800.24 TRIDC4AG012800.24 |
High | No | 1228 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -24.821 AMFE: -0.651 GC content %: 38.111 | |
| Tdicoccoides_TRIDC4AG012800.5 TRIDC4AG012800.5 |
High | No | 1457 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -28.868 AMFE: -0.629 GC content %: 45.916 | |
| Tdicoccoides_TRIDC4AG012800.6 TRIDC4AG012800.6 |
High | No | 1905 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -27.260 AMFE: -0.646 GC content %: 42.205 | |
| Tdicoccoides_TRIDC4AG012800.7 TRIDC4AG012800.7 |
High | No | 2447 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -25.039 AMFE: -0.670 GC content %: 37.393 | |
| Tdicoccoides_TRIDC4AG012800.8 TRIDC4AG012800.8 |
High | No | 3040 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -27.030 AMFE: -0.675 GC content %: 40.033 | |
| Tdicoccoides_TRIDC4AG012800.9 TRIDC4AG012800.9 |
High | No | 1857 | OG0000601 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -27.421 AMFE: -0.640 GC content %: 42.865 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
