Tdicoccoides TRIDC4AG012860
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG012860 [ TRIDC4AG012860] |
4A | 102427123 | 102430969 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG012860.12 TRIDC4AG012860.12 |
Low | No | 1261 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -30.928 AMFE: -0.635 GC content %: 48.692 | |
| Tdicoccoides_TRIDC4AG012860.13 TRIDC4AG012860.13 |
Low | No | 1276 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -31.136 AMFE: -0.641 GC content %: 48.589 | |
| Tdicoccoides_TRIDC4AG012860.14 TRIDC4AG012860.14 |
Low | No | 1060 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -31.226 AMFE: -0.616 GC content %: 50.660 | |
| Tdicoccoides_TRIDC4AG012860.15 TRIDC4AG012860.15 |
Low | No | 1169 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -30.881 AMFE: -0.629 GC content %: 49.102 | |
| Tdicoccoides_TRIDC4AG012860.16 TRIDC4AG012860.16 |
Low | No | 1017 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -30.698 AMFE: -0.610 GC content %: 50.344 | |
| Tdicoccoides_TRIDC4AG012860.17 TRIDC4AG012860.17 |
Low | No | 1485 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -30.124 AMFE: -0.648 GC content %: 46.465 | |
| Tdicoccoides_TRIDC4AG012860.19 TRIDC4AG012860.19 |
Low | No | 1265 | OG0359971 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -24.688 AMFE: -0.635 GC content %: 38.893 | |
| Tdicoccoides_TRIDC4AG012860.2 TRIDC4AG012860.2 |
Low | No | 1751 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -31.856 AMFE: -0.627 GC content %: 50.771 | |
| Tdicoccoides_TRIDC4AG012860.20 TRIDC4AG012860.20 |
Low | No | 394 | OG0359972 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -24.467 AMFE: -0.554 GC content %: 44.162 | |
| Tdicoccoides_TRIDC4AG012860.5 TRIDC4AG012860.5 |
Low | No | 1397 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -33.064 AMFE: -0.611 GC content %: 54.116 | |
| Tdicoccoides_TRIDC4AG012860.6 TRIDC4AG012860.6 |
Low | No | 1281 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -32.756 AMFE: -0.599 GC content %: 54.723 | |
| Tdicoccoides_TRIDC4AG012860.7 TRIDC4AG012860.7 |
Low | No | 1163 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -32.115 AMFE: -0.628 GC content %: 51.161 | |
| Tdicoccoides_TRIDC4AG012860.9 TRIDC4AG012860.9 |
Low | No | 1511 | OG0001835 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -30.893 AMFE: -0.655 GC content %: 47.187 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG012860.2 | SwissProt | 2021-04-01 | O64842 | 6.96e-8 |
| Tdicoccoides_TRIDC4AG012860.14 | SwissProt | 2021-04-01 | O64842 | 2.2e-8 |
| Tdicoccoides_TRIDC4AG012860.20 | SwissProt | 2021-04-01 | Q9FM85 | 5.62e-9 |
| Tdicoccoides_TRIDC4AG012860.15 | SwissProt | 2021-04-01 | O64842 | 4.21e-8 |
| Tdicoccoides_TRIDC4AG012860.5 | SwissProt | 2021-04-01 | O64842 | 3.15e-8 |
| Tdicoccoides_TRIDC4AG012860.16 | SwissProt | 2021-04-01 | O64842 | 1.11e-6 |
| Tdicoccoides_TRIDC4AG012860.6 | SwissProt | 2021-04-01 | O64842 | 1.5e-6 |
| Tdicoccoides_TRIDC4AG012860.17 | SwissProt | 2021-04-01 | O64842 | 5.72e-8 |
| Tdicoccoides_TRIDC4AG012860.12 | SwissProt | 2021-04-01 | O64842 | 2.47e-6 |
| Tdicoccoides_TRIDC4AG012860.7 | SwissProt | 2021-04-01 | O64842 | 1.29e-6 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
