GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC4AG015290 [ TRIDC4AG015290]	4A	134623795	134624938	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC4AG015290.1 TRIDC4AG015290.1	High	No	339	OG0360013		Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -32.773 AMFE: -0.558 GC content %: 58.702
Tdicoccoides_TRIDC4AG015290.2 TRIDC4AG015290.2	High	No	709	OG0061983		Get ORF Coding potential... Type: noncoding Potential: -0.426 Folding energies... MFEI: -44.528 AMFE: -0.658 GC content %: 67.701

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).