Tdicoccoides TRIDC4AG023820

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tdicoccoides_TRIDC4AG023820
[ TRIDC4AG023820]
4A 318040750 318046159 v1 Triticum dicoccoides (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tdicoccoides_TRIDC4AG023820.1
TRIDC4AG023820.1
High No 2324 OG0002262
Coding potential...
Type: noncoding Potential: -1.175
Folding energies...
MFEI: -28.610 AMFE: -0.644
GC content
%: 44.449
Tdicoccoides_TRIDC4AG023820.10
TRIDC4AG023820.10
High No 1270 OG0002262
Coding potential...
Type: noncoding Potential: -1.148
Folding energies...
MFEI: -24.315 AMFE: -0.658
GC content
%: 36.929
Tdicoccoides_TRIDC4AG023820.2
TRIDC4AG023820.2
High No 1817 OG0002262
Coding potential...
Type: noncoding Potential: -1.166
Folding energies...
MFEI: -30.952 AMFE: -0.640
GC content
%: 48.376
Tdicoccoides_TRIDC4AG023820.3
TRIDC4AG023820.3
High No 1866 OG0002262
Coding potential...
Type: noncoding Potential: -1.002
Folding energies...
MFEI: -25.691 AMFE: -0.639
GC content
%: 40.193
Tdicoccoides_TRIDC4AG023820.4
TRIDC4AG023820.4
High No 2568 OG0002262
Coding potential...
Type: noncoding Potential: -1.210
Folding energies...
MFEI: -26.713 AMFE: -0.649
GC content
%: 41.160
Tdicoccoides_TRIDC4AG023820.5
TRIDC4AG023820.5
High No 2246 OG0002262
Coding potential...
Type: noncoding Potential: -1.201
Folding energies...
MFEI: -25.793 AMFE: -0.644
GC content
%: 40.027
Tdicoccoides_TRIDC4AG023820.6
TRIDC4AG023820.6
High No 2640 OG0002262
Coding potential...
Type: noncoding Potential: -1.212
Folding energies...
MFEI: -26.307 AMFE: -0.645
GC content
%: 40.795
Tdicoccoides_TRIDC4AG023820.7
TRIDC4AG023820.7
High No 2086 OG0002262
Coding potential...
Type: noncoding Potential: -1.196
Folding energies...
MFEI: -27.550 AMFE: -0.645
GC content
%: 42.713
Tdicoccoides_TRIDC4AG023820.8
TRIDC4AG023820.8
High No 2066 OG0002262
Coding potential...
Type: noncoding Potential: -1.049
Folding energies...
MFEI: -24.598 AMFE: -0.627
GC content
%: 39.206
Tdicoccoides_TRIDC4AG023820.9
TRIDC4AG023820.9
High No 1383 OG0002262
Coding potential...
Type: noncoding Potential: -0.962
Folding energies...
MFEI: -26.363 AMFE: -0.607
GC content
%: 43.456


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tdicoccoides_TRIDC4AG023820.png