Tdicoccoides TRIDC4AG023820
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG023820 [ TRIDC4AG023820] |
4A | 318040750 | 318046159 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG023820.1 TRIDC4AG023820.1 |
High | No | 2324 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -28.610 AMFE: -0.644 GC content %: 44.449 | |
| Tdicoccoides_TRIDC4AG023820.10 TRIDC4AG023820.10 |
High | No | 1270 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -24.315 AMFE: -0.658 GC content %: 36.929 | |
| Tdicoccoides_TRIDC4AG023820.2 TRIDC4AG023820.2 |
High | No | 1817 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -30.952 AMFE: -0.640 GC content %: 48.376 | |
| Tdicoccoides_TRIDC4AG023820.3 TRIDC4AG023820.3 |
High | No | 1866 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -25.691 AMFE: -0.639 GC content %: 40.193 | |
| Tdicoccoides_TRIDC4AG023820.4 TRIDC4AG023820.4 |
High | No | 2568 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -26.713 AMFE: -0.649 GC content %: 41.160 | |
| Tdicoccoides_TRIDC4AG023820.5 TRIDC4AG023820.5 |
High | No | 2246 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -25.793 AMFE: -0.644 GC content %: 40.027 | |
| Tdicoccoides_TRIDC4AG023820.6 TRIDC4AG023820.6 |
High | No | 2640 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.307 AMFE: -0.645 GC content %: 40.795 | |
| Tdicoccoides_TRIDC4AG023820.7 TRIDC4AG023820.7 |
High | No | 2086 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -27.550 AMFE: -0.645 GC content %: 42.713 | |
| Tdicoccoides_TRIDC4AG023820.8 TRIDC4AG023820.8 |
High | No | 2066 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -24.598 AMFE: -0.627 GC content %: 39.206 | |
| Tdicoccoides_TRIDC4AG023820.9 TRIDC4AG023820.9 |
High | No | 1383 | OG0002262 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -26.363 AMFE: -0.607 GC content %: 43.456 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
