Tdicoccoides TRIDC4AG024990
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG024990 [ TRIDC4AG024990] |
4A | 352089485 | 352094052 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG024990.1 TRIDC4AG024990.1 |
High | No | 2210 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -22.253 AMFE: -0.609 GC content %: 36.561 | |
| Tdicoccoides_TRIDC4AG024990.10 TRIDC4AG024990.10 |
High | No | 2356 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -23.884 AMFE: -0.612 GC content %: 39.007 | |
| Tdicoccoides_TRIDC4AG024990.11 TRIDC4AG024990.11 |
High | No | 3263 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -22.366 AMFE: -0.604 GC content %: 37.021 | |
| Tdicoccoides_TRIDC4AG024990.12 TRIDC4AG024990.12 |
High | No | 2771 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -22.847 AMFE: -0.606 GC content %: 37.712 | |
| Tdicoccoides_TRIDC4AG024990.13 TRIDC4AG024990.13 |
High | No | 1786 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -25.319 AMFE: -0.625 GC content %: 40.538 | |
| Tdicoccoides_TRIDC4AG024990.14 TRIDC4AG024990.14 |
High | No | 494 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -23.725 AMFE: -0.526 GC content %: 45.142 | |
| Tdicoccoides_TRIDC4AG024990.2 TRIDC4AG024990.2 |
High | No | 2886 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -23.101 AMFE: -0.611 GC content %: 37.803 | |
| Tdicoccoides_TRIDC4AG024990.3 TRIDC4AG024990.3 |
High | No | 2242 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -23.791 AMFE: -0.605 GC content %: 39.295 | |
| Tdicoccoides_TRIDC4AG024990.4 TRIDC4AG024990.4 |
High | No | 1459 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.306 AMFE: -0.612 GC content %: 42.975 | |
| Tdicoccoides_TRIDC4AG024990.5 TRIDC4AG024990.5 |
High | No | 3178 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -22.659 AMFE: -0.607 GC content %: 37.319 | |
| Tdicoccoides_TRIDC4AG024990.6 TRIDC4AG024990.6 |
High | No | 3004 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -22.959 AMFE: -0.610 GC content %: 37.617 | |
| Tdicoccoides_TRIDC4AG024990.7 TRIDC4AG024990.7 |
High | No | 1567 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -26.809 AMFE: -0.636 GC content %: 42.183 | |
| Tdicoccoides_TRIDC4AG024990.8 TRIDC4AG024990.8 |
High | No | 3157 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -22.829 AMFE: -0.612 GC content %: 37.314 | |
| Tdicoccoides_TRIDC4AG024990.9 TRIDC4AG024990.9 |
High | No | 1778 | OG0000665 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -25.619 AMFE: -0.634 GC content %: 40.439 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
