Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4AG025250 [ TRIDC4AG025250] |
4A | 359118001 | 359125061 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4AG025250.1 TRIDC4AG025250.1 |
Low | No | 4316 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -24.928 AMFE: -0.679 GC content %: 36.701 | |
Tdicoccoides_TRIDC4AG025250.10 TRIDC4AG025250.10 |
Low | No | 3995 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.133 AMFE: -0.693 GC content %: 40.601 | |
Tdicoccoides_TRIDC4AG025250.3 TRIDC4AG025250.3 |
Low | No | 6285 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -27.201 AMFE: -0.693 GC content %: 39.252 | |
Tdicoccoides_TRIDC4AG025250.5 TRIDC4AG025250.5 |
Low | No | 5085 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -25.518 AMFE: -0.688 GC content %: 37.089 | |
Tdicoccoides_TRIDC4AG025250.6 TRIDC4AG025250.6 |
Low | No | 6089 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -26.981 AMFE: -0.688 GC content %: 39.218 | |
Tdicoccoides_TRIDC4AG025250.7 TRIDC4AG025250.7 |
Low | No | 6108 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -26.973 AMFE: -0.688 GC content %: 39.194 | |
Tdicoccoides_TRIDC4AG025250.9 TRIDC4AG025250.9 |
Low | No | 4235 | OG0002739 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -27.174 AMFE: -0.689 GC content %: 39.433 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC4AG025250.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC4AG025250.6 | SwissProt | 2021-04-01 | Q688X9 | 9.24e-10 |
Tdicoccoides_TRIDC4AG025250.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC4AG025250.7 | SwissProt | 2021-04-01 | Q688X9 | 9.28e-10 |
Tdicoccoides_TRIDC4AG025250.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC4AG025250.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC4AG025250.1 | SwissProt | 2021-04-01 | Q688X9 | 6.34e-10 |
Tdicoccoides_TRIDC4AG025250.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC4AG025250.3 | SwissProt | 2021-04-01 | Q688X9 | 9.56e-10 |
Tdicoccoides_TRIDC4AG025250.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao |
... further results