Tdicoccoides TRIDC4AG026510
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG026510 [ TRIDC4AG026510] |
4A | 393601636 | 393604898 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG026510.1 TRIDC4AG026510.1 |
Low | No | 1123 | OG0001499 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -29.724 AMFE: -0.610 GC content %: 48.709 | |
| Tdicoccoides_TRIDC4AG026510.2 TRIDC4AG026510.2 |
Low | No | 1371 | OG0001499 | Get ORF Coding potential... Type: noncoding Potential: -0.460 Folding energies... MFEI: -29.592 AMFE: -0.621 GC content %: 47.629 | |
| Tdicoccoides_TRIDC4AG026510.3 TRIDC4AG026510.3 |
Low | No | 1062 | OG0001499 | Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -30.979 AMFE: -0.615 GC content %: 50.377 | |
| Tdicoccoides_TRIDC4AG026510.4 TRIDC4AG026510.4 |
Low | No | 1555 | OG0001499 | Get ORF Coding potential... Type: noncoding Potential: -0.474 Folding energies... MFEI: -28.682 AMFE: -0.616 GC content %: 46.559 | |
| Tdicoccoides_TRIDC4AG026510.6 TRIDC4AG026510.6 |
Low | No | 1146 | OG0001499 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -25.864 AMFE: -0.619 GC content %: 41.798 | |
| Tdicoccoides_TRIDC4AG026510.7 TRIDC4AG026510.7 |
Low | No | 876 | OG0001499 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.861 AMFE: -0.629 GC content %: 42.694 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG026510.7 | SwissProt | 2021-04-01 | Q41350 | 6.81e-9 |
| Tdicoccoides_TRIDC4AG026510.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Tdicoccoides_TRIDC4AG026510.1 | SwissProt | 2021-04-01 | Q41350 | 1.18e-8 |
| Tdicoccoides_TRIDC4AG026510.2 | SwissProt | 2021-04-01 | Q41350 | 1.51e-11 |
| Tdicoccoides_TRIDC4AG026510.3 | SwissProt | 2021-04-01 | Q41350 | 9.25e-12 |
| Tdicoccoides_TRIDC4AG026510.4 | SwissProt | 2021-04-01 | Q41350 | 1.89e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
