Tdicoccoides TRIDC4AG033210
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG033210 [ TRIDC4AG033210] |
4A | 496347760 | 496357085 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG033210.10 TRIDC4AG033210.10 |
Low | No | 3034 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -0.033 Folding energies... MFEI: -31.058 AMFE: -0.693 GC content %: 44.825 | |
| Tdicoccoides_TRIDC4AG033210.11 TRIDC4AG033210.11 |
High | No | 1388 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.399 AMFE: -0.677 GC content %: 40.490 | |
| Tdicoccoides_TRIDC4AG033210.2 TRIDC4AG033210.2 |
Low | No | 3372 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -0.039 Folding energies... MFEI: -30.175 AMFE: -0.688 GC content %: 43.891 | |
| Tdicoccoides_TRIDC4AG033210.5 TRIDC4AG033210.5 |
Low | No | 2965 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -30.270 AMFE: -0.678 GC content %: 44.621 | |
| Tdicoccoides_TRIDC4AG033210.6 TRIDC4AG033210.6 |
Low | No | 2171 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -0.007 Folding energies... MFEI: -31.760 AMFE: -0.662 GC content %: 47.996 | |
| Tdicoccoides_TRIDC4AG033210.7 TRIDC4AG033210.7 |
Low | No | 2635 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -0.025 Folding energies... MFEI: -31.184 AMFE: -0.680 GC content %: 45.844 | |
| Tdicoccoides_TRIDC4AG033210.8 TRIDC4AG033210.8 |
Low | No | 2310 | OG0004523 | Get ORF Coding potential... Type: noncoding Potential: -0.010 Folding energies... MFEI: -31.000 AMFE: -0.665 GC content %: 46.623 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG033210.5 | SwissProt | 2021-04-01 | Q9LS25 | 3.28e-32 |
| Tdicoccoides_TRIDC4AG033210.6 | SwissProt | 2021-04-01 | Q9LS25 | 2.32e-32 |
| Tdicoccoides_TRIDC4AG033210.7 | SwissProt | 2021-04-01 | Q9LS25 | 2.85e-32 |
| Tdicoccoides_TRIDC4AG033210.8 | SwissProt | 2021-04-01 | Q9LS25 | 2.48e-32 |
| Tdicoccoides_TRIDC4AG033210.10 | SwissProt | 2021-04-01 | Q9LS25 | 3.36e-32 |
| Tdicoccoides_TRIDC4AG033210.2 | SwissProt | 2021-04-01 | Q9LS25 | 3.74e-32 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
