Tdicoccoides TRIDC4AG054460
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG054460 [ TRIDC4AG054460] |
4A | 628636686 | 628639790 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG054460.11 TRIDC4AG054460.11 |
Low | No | 1625 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.183 Folding energies... MFEI: -27.262 AMFE: -0.676 GC content %: 40.308 | |
| Tdicoccoides_TRIDC4AG054460.14 TRIDC4AG054460.14 |
Low | No | 1996 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -26.187 AMFE: -0.704 GC content %: 37.174 | |
| Tdicoccoides_TRIDC4AG054460.2 TRIDC4AG054460.2 |
Low | No | 2515 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.191 Folding energies... MFEI: -27.276 AMFE: -0.697 GC content %: 39.125 | |
| Tdicoccoides_TRIDC4AG054460.4 TRIDC4AG054460.4 |
Low | No | 1830 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.146 Folding energies... MFEI: -28.366 AMFE: -0.696 GC content %: 40.765 | |
| Tdicoccoides_TRIDC4AG054460.5 TRIDC4AG054460.5 |
Low | No | 1817 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -28.305 AMFE: -0.692 GC content %: 40.892 | |
| Tdicoccoides_TRIDC4AG054460.6 TRIDC4AG054460.6 |
Low | No | 1550 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.111 Folding energies... MFEI: -27.819 AMFE: -0.682 GC content %: 40.774 | |
| Tdicoccoides_TRIDC4AG054460.7 TRIDC4AG054460.7 |
Low | No | 1574 | OG0000845 | Get ORF Coding potential... Type: noncoding Potential: -0.115 Folding energies... MFEI: -27.922 AMFE: -0.680 GC content %: 41.042 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG054460.2 | SwissProt | 2021-04-01 | Q8RXL8 | 1.84e-14 |
| Tdicoccoides_TRIDC4AG054460.4 | SwissProt | 2021-04-01 | Q8RXL8 | 9.47e-15 |
| Tdicoccoides_TRIDC4AG054460.5 | SwissProt | 2021-04-01 | Q8RXL8 | 3.46e-15 |
| Tdicoccoides_TRIDC4AG054460.6 | SwissProt | 2021-04-01 | Q8RXL8 | 7.04e-15 |
| Tdicoccoides_TRIDC4AG054460.11 | SwissProt | 2021-04-01 | Q8RXL8 | 4.32e-14 |
| Tdicoccoides_TRIDC4AG054460.7 | SwissProt | 2021-04-01 | Q8RXL8 | 2.67e-15 |
| Tdicoccoides_TRIDC4AG054460.14 | SwissProt | 2021-04-01 | Q8RXL8 | 1.31e-14 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
