Tdicoccoides TRIDC4AG063490
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063490 [ TRIDC4AG063490] |
4A | 684976965 | 685049165 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063490.1 TRIDC4AG063490.1 |
Low | No | 1121 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.320 Folding energies... MFEI: -30.830 AMFE: -0.639 GC content %: 48.260 | |
| Tdicoccoides_TRIDC4AG063490.2 TRIDC4AG063490.2 |
Low | No | 1083 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -29.954 AMFE: -0.626 GC content %: 47.830 | |
| Tdicoccoides_TRIDC4AG063490.3 TRIDC4AG063490.3 |
Low | No | 530 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.372 Folding energies... MFEI: -29.321 AMFE: -0.598 GC content %: 49.057 | |
| Tdicoccoides_TRIDC4AG063490.4 TRIDC4AG063490.4 |
Low | No | 467 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -28.779 AMFE: -0.582 GC content %: 49.465 | |
| Tdicoccoides_TRIDC4AG063490.5 TRIDC4AG063490.5 |
Low | No | 367 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -28.501 AMFE: -0.581 GC content %: 49.046 | |
| Tdicoccoides_TRIDC4AG063490.6 TRIDC4AG063490.6 |
Low | No | 431 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -29.327 AMFE: -0.611 GC content %: 48.028 | |
| Tdicoccoides_TRIDC4AG063490.7 TRIDC4AG063490.7 |
Low | No | 417 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -29.209 AMFE: -0.631 GC content %: 46.283 | |
| Tdicoccoides_TRIDC4AG063490.8 TRIDC4AG063490.8 |
Low | No | 444 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -27.568 AMFE: -0.603 GC content %: 45.721 | |
| Tdicoccoides_TRIDC4AG063490.9 TRIDC4AG063490.9 |
High | No | 774 | OG0002787 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -27.429 AMFE: -0.614 GC content %: 44.703 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063490.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4AG063490.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
