Tdicoccoides TRIDC4AG063670
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063670 [ TRIDC4AG063670] |
4A | 686158094 | 686178340 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063670.10 TRIDC4AG063670.10 |
High | No | 781 | OG0360676 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -23.175 AMFE: -0.680 GC content %: 34.059 | |
| Tdicoccoides_TRIDC4AG063670.12 TRIDC4AG063670.12 |
High | No | 1623 | OG0006635 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -31.319 AMFE: -0.663 GC content %: 47.258 | |
| Tdicoccoides_TRIDC4AG063670.3 TRIDC4AG063670.3 |
High | No | 2467 | OG0006635 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -32.161 AMFE: -0.680 GC content %: 47.264 | |
| Tdicoccoides_TRIDC4AG063670.6 TRIDC4AG063670.6 |
High | No | 1752 | OG0006635 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -34.743 AMFE: -0.679 GC content %: 51.199 | |
| Tdicoccoides_TRIDC4AG063670.7 TRIDC4AG063670.7 |
High | No | 1058 | OG0006635 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -31.749 AMFE: -0.646 GC content %: 49.149 | |
| Tdicoccoides_TRIDC4AG063670.8 TRIDC4AG063670.8 |
High | No | 1156 | OG0006635 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -31.825 AMFE: -0.670 GC content %: 47.491 | |
| Tdicoccoides_TRIDC4AG063670.9 TRIDC4AG063670.9 |
High | No | 786 | OG0006635 | Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -32.150 AMFE: -0.679 GC content %: 47.328 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
