Tdicoccoides TRIDC4AG063900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063900 [ TRIDC4AG063900] |
4A | 687732411 | 687734813 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063900.1 TRIDC4AG063900.1 |
Low | No | 1755 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -29.829 AMFE: -0.644 GC content %: 46.325 | |
| Tdicoccoides_TRIDC4AG063900.2 TRIDC4AG063900.2 |
Low | No | 832 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -35.601 AMFE: -0.654 GC content %: 54.447 | |
| Tdicoccoides_TRIDC4AG063900.3 TRIDC4AG063900.3 |
Low | No | 433 | OG0360682 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -25.404 AMFE: -0.521 GC content %: 48.730 | |
| Tdicoccoides_TRIDC4AG063900.5 TRIDC4AG063900.5 |
High | No | 496 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -37.702 AMFE: -0.714 GC content %: 52.823 | |
| Tdicoccoides_TRIDC4AG063900.6 TRIDC4AG063900.6 |
High | No | 801 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -32.135 AMFE: -0.669 GC content %: 48.065 | |
| Tdicoccoides_TRIDC4AG063900.7 TRIDC4AG063900.7 |
High | No | 500 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -37.080 AMFE: -0.710 GC content %: 52.200 | |
| Tdicoccoides_TRIDC4AG063900.8 TRIDC4AG063900.8 |
High | No | 600 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -35.650 AMFE: -0.701 GC content %: 50.833 | |
| Tdicoccoides_TRIDC4AG063900.9 TRIDC4AG063900.9 |
High | No | 524 | OG0004526 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -36.260 AMFE: -0.706 GC content %: 51.336 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4AG063900.1 | SwissProt | 2021-04-01 | Q8LEM8 | 1.74e-9 |
| Tdicoccoides_TRIDC4AG063900.2 | SwissProt | 2021-04-01 | Q8LEM8 | 7.5e-10 |
| Tdicoccoides_TRIDC4AG063900.3 | SwissProt | 2021-04-01 | Q9P836 | 3.53e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
