Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4AG071190 [ TRIDC4AG071190] |
4A | 722245594 | 722254228 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4AG071190.1 TRIDC4AG071190.1 |
Low | No | 947 | OG0360765 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -26.367 AMFE: -0.666 GC content %: 39.599 | |
Tdicoccoides_TRIDC4AG071190.12 TRIDC4AG071190.12 |
Low | No | 1137 | OG0360766 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -29.543 AMFE: -0.700 GC content %: 42.216 | |
Tdicoccoides_TRIDC4AG071190.34 TRIDC4AG071190.34 |
Low | No | 907 | OG0360767 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -24.201 AMFE: -0.667 GC content %: 36.273 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC4AG071190.12 | SwissProt | 2021-04-01 | Q53P98 | 2.91e-5 |
Tdicoccoides_TRIDC4AG071190.34 | SwissProt | 2021-04-01 | Q53P98 | 7.46e-15 |
Tdicoccoides_TRIDC4AG071190.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac? | |
Tdicoccoides_TRIDC4AG071190.34 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |