Tdicoccoides TRIDC4BG000350
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG000350 [ TRIDC4BG000350] |
4B | 1294477 | 1299068 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG000350.1 TRIDC4BG000350.1 |
High | No | 776 | OG0006637 | Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -28.454 AMFE: -0.602 GC content %: 47.294 | |
| Tdicoccoides_TRIDC4BG000350.2 TRIDC4BG000350.2 |
High | No | 927 | OG0006637 | Get ORF Coding potential... Type: noncoding Potential: -0.870 Folding energies... MFEI: -27.282 AMFE: -0.614 GC content %: 44.444 | |
| Tdicoccoides_TRIDC4BG000350.3 TRIDC4BG000350.3 |
High | No | 1102 | OG0006637 | Get ORF Coding potential... Type: noncoding Potential: -0.535 Folding energies... MFEI: -26.670 AMFE: -0.614 GC content %: 43.466 | |
| Tdicoccoides_TRIDC4BG000350.4 TRIDC4BG000350.4 |
High | No | 782 | OG0006637 | Get ORF Coding potential... Type: noncoding Potential: -0.436 Folding energies... MFEI: -27.238 AMFE: -0.598 GC content %: 45.524 | |
| Tdicoccoides_TRIDC4BG000350.5 TRIDC4BG000350.5 |
High | No | 636 | OG0006637 | Get ORF Coding potential... Type: noncoding Potential: -0.424 Folding energies... MFEI: -27.186 AMFE: -0.582 GC content %: 46.698 | |
| Tdicoccoides_TRIDC4BG000350.6 TRIDC4BG000350.6 |
High | No | 935 | OG0006637 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -27.048 AMFE: -0.601 GC content %: 45.027 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
