Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG000450 [ TRIDC4BG000450] |
4B | 1752014 | 1755563 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG000450.3 TRIDC4BG000450.3 |
High | No | 555 | OG0009443 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -32.649 AMFE: -0.579 GC content %: 56.396 | |
Tdicoccoides_TRIDC4BG000450.4 TRIDC4BG000450.4 |
Low | No | 542 | OG0009443 | Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -33.266 AMFE: -0.583 GC content %: 57.011 | |
Tdicoccoides_TRIDC4BG000450.5 TRIDC4BG000450.5 |
Low | No | 553 | OG0009443 | Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -32.803 AMFE: -0.583 GC content %: 56.239 | |
Tdicoccoides_TRIDC4BG000450.6 TRIDC4BG000450.6 |
Low | No | 576 | OG0009443 | Get ORF Coding potential... Type: noncoding Potential: -0.552 Folding energies... MFEI: -33.177 AMFE: -0.595 GC content %: 55.729 | |
Tdicoccoides_TRIDC4BG000450.7 TRIDC4BG000450.7 |
High | No | 314 | OG0009443 | Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -36.815 AMFE: -0.612 GC content %: 60.191 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC4BG000450.6 | SwissProt | 2021-04-01 | Q9ZUX4 | 2.33e-5 |
Tdicoccoides_TRIDC4BG000450.4 | SwissProt | 2021-04-01 | Q9ZUX4 | 4.43e-4 |
Tdicoccoides_TRIDC4BG000450.5 | SwissProt | 2021-04-01 | Q9ZUX4 | 4.47e-4 |