Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG002550 [ TRIDC4BG002550] |
4B | 9793948 | 9796859 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG002550.1 TRIDC4BG002550.1 |
Low | No | 613 | OG0023110 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -29.429 AMFE: -0.612 GC content %: 48.124 | |
Tdicoccoides_TRIDC4BG002550.3 TRIDC4BG002550.3 |
High | No | 377 | OG0023110 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -29.629 AMFE: -0.588 GC content %: 50.398 | |
Tdicoccoides_TRIDC4BG002550.4 TRIDC4BG002550.4 |
High | No | 327 | OG0023110 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -28.563 AMFE: -0.563 GC content %: 50.765 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC4BG002550.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |