Tdicoccoides TRIDC4BG002580
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG002580 [ TRIDC4BG002580] |
4B | 9976398 | 9982066 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG002580.1 TRIDC4BG002580.1 |
High | No | 1505 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -27.482 AMFE: -0.631 GC content %: 43.522 | |
| Tdicoccoides_TRIDC4BG002580.10 TRIDC4BG002580.10 |
High | No | 856 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -32.103 AMFE: -0.563 GC content %: 57.009 | |
| Tdicoccoides_TRIDC4BG002580.2 TRIDC4BG002580.2 |
High | No | 1078 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -28.442 AMFE: -0.645 GC content %: 44.063 | |
| Tdicoccoides_TRIDC4BG002580.3 TRIDC4BG002580.3 |
High | No | 1204 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -28.530 AMFE: -0.658 GC content %: 43.355 | |
| Tdicoccoides_TRIDC4BG002580.4 TRIDC4BG002580.4 |
High | No | 1115 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -28.305 AMFE: -0.643 GC content %: 44.036 | |
| Tdicoccoides_TRIDC4BG002580.5 TRIDC4BG002580.5 |
High | No | 595 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -29.328 AMFE: -0.619 GC content %: 47.395 | |
| Tdicoccoides_TRIDC4BG002580.8 TRIDC4BG002580.8 |
High | No | 931 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -34.597 AMFE: -0.616 GC content %: 56.176 | |
| Tdicoccoides_TRIDC4BG002580.9 TRIDC4BG002580.9 |
High | No | 987 | OG0000064 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -34.732 AMFE: -0.624 GC content %: 55.623 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
