Tdicoccoides TRIDC4BG010220
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG010220 [ TRIDC4BG010220] |
4B | 56864710 | 56867403 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG010220.1 TRIDC4BG010220.1 |
Low | No | 1849 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -27.161 AMFE: -0.637 GC content %: 42.618 | |
| Tdicoccoides_TRIDC4BG010220.2 TRIDC4BG010220.2 |
Low | No | 2609 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -27.160 AMFE: -0.652 GC content %: 41.663 | |
| Tdicoccoides_TRIDC4BG010220.3 TRIDC4BG010220.3 |
Low | No | 2423 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -27.251 AMFE: -0.650 GC content %: 41.931 | |
| Tdicoccoides_TRIDC4BG010220.4 TRIDC4BG010220.4 |
Low | No | 2379 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -27.348 AMFE: -0.650 GC content %: 42.077 | |
| Tdicoccoides_TRIDC4BG010220.5 TRIDC4BG010220.5 |
Low | No | 1835 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -27.041 AMFE: -0.639 GC content %: 42.343 | |
| Tdicoccoides_TRIDC4BG010220.6 TRIDC4BG010220.6 |
Low | No | 2471 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -26.726 AMFE: -0.650 GC content %: 41.117 | |
| Tdicoccoides_TRIDC4BG010220.7 TRIDC4BG010220.7 |
Low | No | 1160 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -21.552 AMFE: -0.597 GC content %: 36.121 | |
| Tdicoccoides_TRIDC4BG010220.8 TRIDC4BG010220.8 |
Low | No | 1413 | OG0003583 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -23.468 AMFE: -0.641 GC content %: 36.589 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG010220.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG010220.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
