Tdicoccoides TRIDC4BG013140

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tdicoccoides_TRIDC4BG013140
[ TRIDC4BG013140]
4B 80930832 80934819 v1 Triticum dicoccoides (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tdicoccoides_TRIDC4BG013140.5
TRIDC4BG013140.5
High No 1930 OG0009448
Coding potential...
Type: noncoding Potential: -1.099
Folding energies...
MFEI: -24.466 AMFE: -0.636
GC content
%: 38.497
Tdicoccoides_TRIDC4BG013140.6
TRIDC4BG013140.6
High No 847 OG0009448
Coding potential...
Type: noncoding Potential: -0.855
Folding energies...
MFEI: -25.915 AMFE: -0.622
GC content
%: 41.677
Tdicoccoides_TRIDC4BG013140.7
TRIDC4BG013140.7
High No 2438 OG0009448
Coding potential...
Type: noncoding Potential: -1.112
Folding energies...
MFEI: -24.405 AMFE: -0.642
GC content
%: 38.023
Tdicoccoides_TRIDC4BG013140.8
TRIDC4BG013140.8
High No 2324 OG0009448
Coding potential...
Type: noncoding Potential: -1.109
Folding energies...
MFEI: -24.488 AMFE: -0.644
GC content
%: 38.038
Tdicoccoides_TRIDC4BG013140.9
TRIDC4BG013140.9
High No 959 OG0009448
Coding potential...
Type: noncoding Potential: -0.947
Folding energies...
MFEI: -23.754 AMFE: -0.587
GC content
%: 40.459


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tdicoccoides_TRIDC4BG013140.png