Tdicoccoides TRIDC4BG013140
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG013140 [ TRIDC4BG013140] |
4B | 80930832 | 80934819 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG013140.5 TRIDC4BG013140.5 |
High | No | 1930 | OG0009448 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -24.466 AMFE: -0.636 GC content %: 38.497 | |
| Tdicoccoides_TRIDC4BG013140.6 TRIDC4BG013140.6 |
High | No | 847 | OG0009448 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -25.915 AMFE: -0.622 GC content %: 41.677 | |
| Tdicoccoides_TRIDC4BG013140.7 TRIDC4BG013140.7 |
High | No | 2438 | OG0009448 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -24.405 AMFE: -0.642 GC content %: 38.023 | |
| Tdicoccoides_TRIDC4BG013140.8 TRIDC4BG013140.8 |
High | No | 2324 | OG0009448 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -24.488 AMFE: -0.644 GC content %: 38.038 | |
| Tdicoccoides_TRIDC4BG013140.9 TRIDC4BG013140.9 |
High | No | 959 | OG0009448 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -23.754 AMFE: -0.587 GC content %: 40.459 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
