Tdicoccoides TRIDC4BG021990
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG021990 [ TRIDC4BG021990] |
4B | 182186617 | 182189140 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG021990.10 TRIDC4BG021990.10 |
High | No | 655 | OG0009451 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -27.495 AMFE: -0.592 GC content %: 46.412 | |
| Tdicoccoides_TRIDC4BG021990.4 TRIDC4BG021990.4 |
Low | No | 1290 | OG0009451 | Get ORF Coding potential... Type: noncoding Potential: -0.547 Folding energies... MFEI: -29.992 AMFE: -0.650 GC content %: 46.124 | |
| Tdicoccoides_TRIDC4BG021990.5 TRIDC4BG021990.5 |
Low | No | 846 | OG0009451 | Get ORF Coding potential... Type: noncoding Potential: -0.235 Folding energies... MFEI: -25.910 AMFE: -0.634 GC content %: 40.898 | |
| Tdicoccoides_TRIDC4BG021990.6 TRIDC4BG021990.6 |
Low | No | 798 | OG0009451 | Get ORF Coding potential... Type: noncoding Potential: -0.215 Folding energies... MFEI: -25.627 AMFE: -0.609 GC content %: 42.105 | |
| Tdicoccoides_TRIDC4BG021990.7 TRIDC4BG021990.7 |
Low | No | 1097 | OG0009451 | Get ORF Coding potential... Type: noncoding Potential: -0.308 Folding energies... MFEI: -30.337 AMFE: -0.646 GC content %: 46.946 | |
| Tdicoccoides_TRIDC4BG021990.9 TRIDC4BG021990.9 |
Low | No | 275 | OG0361141 | Get ORF Coding potential... Type: noncoding Potential: -0.216 Folding energies... MFEI: -26.909 AMFE: -0.574 GC content %: 46.909 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG021990.7 | SwissProt | 2021-04-01 | Q9SR32 | 2.44e-40 |
| Tdicoccoides_TRIDC4BG021990.9 | SwissProt | 2021-04-01 | Q9SR32 | 1.17e-14 |
| Tdicoccoides_TRIDC4BG021990.4 | SwissProt | 2021-04-01 | Q9SR32 | 2.98e-30 |
| Tdicoccoides_TRIDC4BG021990.5 | SwissProt | 2021-04-01 | Q9SR32 | 2.79e-41 |
| Tdicoccoides_TRIDC4BG021990.6 | SwissProt | 2021-04-01 | Q9SR32 | 1.75e-41 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
