Tdicoccoides TRIDC4BG023270
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG023270 [ TRIDC4BG023270] |
4B | 203023045 | 203027860 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG023270.10 TRIDC4BG023270.10 |
Low | No | 981 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -37.207 AMFE: -0.612 GC content %: 60.754 | |
| Tdicoccoides_TRIDC4BG023270.13 TRIDC4BG023270.13 |
High | No | 431 | OG0361153 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -24.664 AMFE: -0.548 GC content %: 45.012 | |
| Tdicoccoides_TRIDC4BG023270.14 TRIDC4BG023270.14 |
Low | No | 995 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -32.724 AMFE: -0.649 GC content %: 50.452 | |
| Tdicoccoides_TRIDC4BG023270.16 TRIDC4BG023270.16 |
Low | No | 1151 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.681 Folding energies... MFEI: -31.729 AMFE: -0.666 GC content %: 47.611 | |
| Tdicoccoides_TRIDC4BG023270.17 TRIDC4BG023270.17 |
Low | No | 921 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.474 Folding energies... MFEI: -31.303 AMFE: -0.666 GC content %: 47.014 | |
| Tdicoccoides_TRIDC4BG023270.18 TRIDC4BG023270.18 |
Low | No | 1167 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -30.266 AMFE: -0.673 GC content %: 44.987 | |
| Tdicoccoides_TRIDC4BG023270.19 TRIDC4BG023270.19 |
Low | No | 1172 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.700 Folding energies... MFEI: -30.026 AMFE: -0.665 GC content %: 45.137 | |
| Tdicoccoides_TRIDC4BG023270.2 TRIDC4BG023270.2 |
Low | No | 1141 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -36.748 AMFE: -0.622 GC content %: 59.071 | |
| Tdicoccoides_TRIDC4BG023270.21 TRIDC4BG023270.21 |
Low | No | 965 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -30.591 AMFE: -0.659 GC content %: 46.425 | |
| Tdicoccoides_TRIDC4BG023270.23 TRIDC4BG023270.23 |
Low | No | 886 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -25.609 AMFE: -0.622 GC content %: 41.196 | |
| Tdicoccoides_TRIDC4BG023270.3 TRIDC4BG023270.3 |
Low | No | 1378 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -35.334 AMFE: -0.632 GC content %: 55.878 | |
| Tdicoccoides_TRIDC4BG023270.4 TRIDC4BG023270.4 |
Low | No | 1160 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.110 Folding energies... MFEI: -36.767 AMFE: -0.622 GC content %: 59.138 | |
| Tdicoccoides_TRIDC4BG023270.5 TRIDC4BG023270.5 |
Low | No | 1312 | OG0001501 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -35.030 AMFE: -0.624 GC content %: 56.098 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG023270.4 | SwissProt | 2021-04-01 | A0A178 | 1.41e-10 |
| Tdicoccoides_TRIDC4BG023270.19 | SwissProt | 2021-04-01 | A0A178 | 5.19e-10 |
| Tdicoccoides_TRIDC4BG023270.10 | SwissProt | 2021-04-01 | A0A178 | 1.37e-10 |
| Tdicoccoides_TRIDC4BG023270.5 | SwissProt | 2021-04-01 | A0A178 | 6.95e-10 |
| Tdicoccoides_TRIDC4BG023270.2 | SwissProt | 2021-04-01 | A0A178 | 1.61e-10 |
| Tdicoccoides_TRIDC4BG023270.14 | SwissProt | 2021-04-01 | A0A178 | 1.95e-10 |
| Tdicoccoides_TRIDC4BG023270.21 | SwissProt | 2021-04-01 | A0A178 | 7.54e-10 |
| Tdicoccoides_TRIDC4BG023270.16 | SwissProt | 2021-04-01 | A0A178 | 4.93e-10 |
| Tdicoccoides_TRIDC4BG023270.23 | SwissProt | 2021-04-01 | Q10FF9 | 8.4e-10 |
| Tdicoccoides_TRIDC4BG023270.17 | SwissProt | 2021-04-01 | A0A178 | 2.97e-10 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
