Tdicoccoides TRIDC4BG025220
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG025220 [ TRIDC4BG025220] |
4B | 238025520 | 238030969 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG025220.10 TRIDC4BG025220.10 |
High | No | 1019 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -26.300 AMFE: -0.658 GC content %: 39.941 | |
| Tdicoccoides_TRIDC4BG025220.11 TRIDC4BG025220.11 |
Low | No | 491 | OG0361167 | Get ORF Coding potential... Type: noncoding Potential: -1.377 Folding energies... MFEI: -24.297 AMFE: -0.609 GC content %: 39.919 | |
| Tdicoccoides_TRIDC4BG025220.12 TRIDC4BG025220.12 |
Low | No | 1514 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -27.490 AMFE: -0.651 GC content %: 42.206 | |
| Tdicoccoides_TRIDC4BG025220.13 TRIDC4BG025220.13 |
High | No | 1585 | OG0361168 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -26.353 AMFE: -0.683 GC content %: 38.612 | |
| Tdicoccoides_TRIDC4BG025220.2 TRIDC4BG025220.2 |
Low | No | 1402 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -31.098 AMFE: -0.648 GC content %: 48.003 | |
| Tdicoccoides_TRIDC4BG025220.3 TRIDC4BG025220.3 |
High | No | 650 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -35.338 AMFE: -0.645 GC content %: 54.769 | |
| Tdicoccoides_TRIDC4BG025220.4 TRIDC4BG025220.4 |
Low | No | 1882 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -30.792 AMFE: -0.649 GC content %: 47.450 | |
| Tdicoccoides_TRIDC4BG025220.5 TRIDC4BG025220.5 |
Low | No | 1463 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -29.576 AMFE: -0.633 GC content %: 46.753 | |
| Tdicoccoides_TRIDC4BG025220.6 TRIDC4BG025220.6 |
High | No | 520 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -35.385 AMFE: -0.643 GC content %: 55.000 | |
| Tdicoccoides_TRIDC4BG025220.7 TRIDC4BG025220.7 |
Low | No | 1701 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -28.907 AMFE: -0.618 GC content %: 46.737 | |
| Tdicoccoides_TRIDC4BG025220.8 TRIDC4BG025220.8 |
Low | No | 1246 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -29.663 AMFE: -0.648 GC content %: 45.746 | |
| Tdicoccoides_TRIDC4BG025220.9 TRIDC4BG025220.9 |
Low | No | 1243 | OG0002267 | Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -29.348 AMFE: -0.639 GC content %: 45.937 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG025220.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC4BG025220.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC4BG025220.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC4BG025220.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC4BG025220.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC4BG025220.12 | SwissProt | 2021-04-01 | Q9AUE0 | 9.54e-10 |
| Tdicoccoides_TRIDC4BG025220.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC4BG025220.4 | SwissProt | 2021-04-01 | Q9AUE0 | 1.45e-9 |
| Tdicoccoides_TRIDC4BG025220.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC4BG025220.7 | SwissProt | 2021-04-01 | Q9SL03 | 7.8e-11 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
