Tdicoccoides TRIDC4BG025590
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG025590 [ TRIDC4BG025590] |
4B | 244744010 | 244753274 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG025590.1 TRIDC4BG025590.1 |
Low | No | 2440 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -33.340 AMFE: -0.717 GC content %: 46.516 | |
| Tdicoccoides_TRIDC4BG025590.3 TRIDC4BG025590.3 |
Low | No | 2326 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -33.491 AMFE: -0.715 GC content %: 46.862 | |
| Tdicoccoides_TRIDC4BG025590.4 TRIDC4BG025590.4 |
Low | No | 1775 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -32.085 AMFE: -0.659 GC content %: 48.676 | |
| Tdicoccoides_TRIDC4BG025590.5 TRIDC4BG025590.5 |
High | No | 545 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -36.679 AMFE: -0.678 GC content %: 54.128 | |
| Tdicoccoides_TRIDC4BG025590.6 TRIDC4BG025590.6 |
Low | No | 1656 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -33.527 AMFE: -0.719 GC content %: 46.618 | |
| Tdicoccoides_TRIDC4BG025590.7 TRIDC4BG025590.7 |
Low | No | 1635 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -35.450 AMFE: -0.722 GC content %: 49.113 | |
| Tdicoccoides_TRIDC4BG025590.8 TRIDC4BG025590.8 |
Low | No | 1686 | OG0004534 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -31.163 AMFE: -0.706 GC content %: 44.128 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG025590.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib | |
| Tdicoccoides_TRIDC4BG025590.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib | |
| Tdicoccoides_TRIDC4BG025590.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib | |
| Tdicoccoides_TRIDC4BG025590.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib | |
| Tdicoccoides_TRIDC4BG025590.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib | |
| Tdicoccoides_TRIDC4BG025590.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
