GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC4BG025670 [ TRIDC4BG025670]	4B	246583991	246585850	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC4BG025670.1 TRIDC4BG025670.1	High	No	1525	OG0023133		Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -38.649 AMFE: -0.625 GC content %: 61.836
Tdicoccoides_TRIDC4BG025670.2 TRIDC4BG025670.2	High	No	1638	OG0023133		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -38.211 AMFE: -0.635 GC content %: 60.134
Tdicoccoides_TRIDC4BG025670.3 TRIDC4BG025670.3	High	No	1780	OG0023133		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -37.534 AMFE: -0.637 GC content %: 58.876

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).