Tdicoccoides TRIDC4BG026070
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG026070 [ TRIDC4BG026070] |
4B | 257978056 | 257985073 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG026070.1 TRIDC4BG026070.1 |
High | No | 336 | OG0022938 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -26.220 AMFE: -0.580 GC content %: 45.238 | |
| Tdicoccoides_TRIDC4BG026070.11 TRIDC4BG026070.11 |
High | No | 1754 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -30.798 AMFE: -0.669 GC content %: 46.066 | |
| Tdicoccoides_TRIDC4BG026070.12 TRIDC4BG026070.12 |
High | No | 3110 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -30.788 AMFE: -0.682 GC content %: 45.145 | |
| Tdicoccoides_TRIDC4BG026070.13 TRIDC4BG026070.13 |
High | No | 3072 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -31.198 AMFE: -0.687 GC content %: 45.410 | |
| Tdicoccoides_TRIDC4BG026070.14 TRIDC4BG026070.14 |
High | No | 2976 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -31.082 AMFE: -0.683 GC content %: 45.531 | |
| Tdicoccoides_TRIDC4BG026070.15 TRIDC4BG026070.15 |
High | No | 2599 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -31.593 AMFE: -0.675 GC content %: 46.787 | |
| Tdicoccoides_TRIDC4BG026070.16 TRIDC4BG026070.16 |
High | No | 1352 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -29.460 AMFE: -0.668 GC content %: 44.083 | |
| Tdicoccoides_TRIDC4BG026070.17 TRIDC4BG026070.17 |
High | No | 1275 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -29.639 AMFE: -0.668 GC content %: 44.392 | |
| Tdicoccoides_TRIDC4BG026070.18 TRIDC4BG026070.18 |
High | No | 1555 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -31.762 AMFE: -0.679 GC content %: 46.752 | |
| Tdicoccoides_TRIDC4BG026070.19 TRIDC4BG026070.19 |
High | No | 1499 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -32.435 AMFE: -0.691 GC content %: 46.965 | |
| Tdicoccoides_TRIDC4BG026070.20 TRIDC4BG026070.20 |
High | No | 1424 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -32.732 AMFE: -0.691 GC content %: 47.402 | |
| Tdicoccoides_TRIDC4BG026070.21 TRIDC4BG026070.21 |
High | No | 1312 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -28.544 AMFE: -0.656 GC content %: 43.521 | |
| Tdicoccoides_TRIDC4BG026070.7 TRIDC4BG026070.7 |
High | No | 2030 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -32.764 AMFE: -0.681 GC content %: 48.079 | |
| Tdicoccoides_TRIDC4BG026070.8 TRIDC4BG026070.8 |
High | No | 1863 | OG0001255 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -32.877 AMFE: -0.676 GC content %: 48.631 | |
| Tdicoccoides_TRIDC4BG026070.9 TRIDC4BG026070.9 |
High | No | 1014 | OG0361173 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -24.172 AMFE: -0.632 GC content %: 38.264 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
