Tdicoccoides TRIDC4BG027390
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG027390 [ TRIDC4BG027390] |
4B | 303113080 | 303116237 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG027390.10 TRIDC4BG027390.10 |
High | No | 2620 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -25.809 AMFE: -0.631 GC content %: 40.916 | |
| Tdicoccoides_TRIDC4BG027390.12 TRIDC4BG027390.12 |
Low | No | 2829 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -26.048 AMFE: -0.649 GC content %: 40.156 | |
| Tdicoccoides_TRIDC4BG027390.14 TRIDC4BG027390.14 |
Low | No | 2437 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -26.639 AMFE: -0.660 GC content %: 40.378 | |
| Tdicoccoides_TRIDC4BG027390.15 TRIDC4BG027390.15 |
Low | No | 2421 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -26.679 AMFE: -0.652 GC content %: 40.892 | |
| Tdicoccoides_TRIDC4BG027390.16 TRIDC4BG027390.16 |
High | No | 2504 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -26.278 AMFE: -0.648 GC content %: 40.535 | |
| Tdicoccoides_TRIDC4BG027390.17 TRIDC4BG027390.17 |
Low | No | 2455 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -26.676 AMFE: -0.653 GC content %: 40.855 | |
| Tdicoccoides_TRIDC4BG027390.18 TRIDC4BG027390.18 |
Low | No | 1089 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -28.200 AMFE: -0.627 GC content %: 44.995 | |
| Tdicoccoides_TRIDC4BG027390.9 TRIDC4BG027390.9 |
High | No | 3005 | OG0003584 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -25.697 AMFE: -0.637 GC content %: 40.366 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG027390.17 | SwissProt | 2021-04-01 | Q6NMM1 | 3.76e-4 |
| Tdicoccoides_TRIDC4BG027390.18 | SwissProt | 2021-04-01 | Q6NMM1 | 1.67e-4 |
| Tdicoccoides_TRIDC4BG027390.12 | SwissProt | 2021-04-01 | Q6NMM1 | 4.39e-4 |
| Tdicoccoides_TRIDC4BG027390.14 | SwissProt | 2021-04-01 | Q6NMM1 | 3.73e-4 |
| Tdicoccoides_TRIDC4BG027390.15 | SwissProt | 2021-04-01 | Q6NMM1 | 1.0e-3 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
