Tdicoccoides TRIDC4BG027650
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG027650 [ TRIDC4BG027650] |
4B | 307466299 | 307467364 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG027650.1 TRIDC4BG027650.1 |
Low | No | 682 | OG0006645 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -23.827 AMFE: -0.602 GC content %: 39.589 | |
| Tdicoccoides_TRIDC4BG027650.2 TRIDC4BG027650.2 |
Low | No | 654 | OG0006645 | Get ORF Coding potential... Type: noncoding Potential: -0.002 Folding energies... MFEI: -26.743 AMFE: -0.579 GC content %: 46.177 | |
| Tdicoccoides_TRIDC4BG027650.3 TRIDC4BG027650.3 |
Low | No | 957 | OG0006645 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -25.643 AMFE: -0.579 GC content %: 44.305 | |
| Tdicoccoides_TRIDC4BG027650.4 TRIDC4BG027650.4 |
Low | No | 1066 | OG0006645 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -25.385 AMFE: -0.558 GC content %: 45.497 | |
| Tdicoccoides_TRIDC4BG027650.5 TRIDC4BG027650.5 |
Low | No | 869 | OG0006645 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -25.685 AMFE: -0.610 GC content %: 42.117 | |
| Tdicoccoides_TRIDC4BG027650.6 TRIDC4BG027650.6 |
Low | No | 804 | OG0006645 | Get ORF Coding potential... Type: noncoding Potential: -0.071 Folding energies... MFEI: -26.032 AMFE: -0.593 GC content %: 43.905 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG027650.4 | SwissProt | 2021-04-01 | Q01K11 | 1.68e-11 |
| Tdicoccoides_TRIDC4BG027650.5 | SwissProt | 2021-04-01 | Q01K11 | 7.77e-12 |
| Tdicoccoides_TRIDC4BG027650.6 | SwissProt | 2021-04-01 | Q01K11 | 9.09e-20 |
| Tdicoccoides_TRIDC4BG027650.1 | SwissProt | 2021-04-01 | Q01K11 | 2.66e-12 |
| Tdicoccoides_TRIDC4BG027650.2 | SwissProt | 2021-04-01 | Q01K11 | 2.8e-20 |
| Tdicoccoides_TRIDC4BG027650.3 | SwissProt | 2021-04-01 | Q01K11 | 1.15e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
