Tdicoccoides TRIDC4BG028540
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG028540 [ TRIDC4BG028540] |
4B | 331428103 | 331435344 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG028540.1 TRIDC4BG028540.1 |
Low | No | 5180 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -27.050 AMFE: -0.681 GC content %: 39.710 | |
| Tdicoccoides_TRIDC4BG028540.10 TRIDC4BG028540.10 |
Low | No | 3886 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -27.396 AMFE: -0.659 GC content %: 41.585 | |
| Tdicoccoides_TRIDC4BG028540.11 TRIDC4BG028540.11 |
Low | No | 5182 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -27.071 AMFE: -0.682 GC content %: 39.714 | |
| Tdicoccoides_TRIDC4BG028540.12 TRIDC4BG028540.12 |
Low | No | 4080 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -27.706 AMFE: -0.677 GC content %: 40.931 | |
| Tdicoccoides_TRIDC4BG028540.13 TRIDC4BG028540.13 |
Low | No | 2861 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.772 Folding energies... MFEI: -28.434 AMFE: -0.667 GC content %: 42.607 | |
| Tdicoccoides_TRIDC4BG028540.14 TRIDC4BG028540.14 |
Low | No | 4060 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -27.542 AMFE: -0.668 GC content %: 41.232 | |
| Tdicoccoides_TRIDC4BG028540.15 TRIDC4BG028540.15 |
Low | No | 2597 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -28.799 AMFE: -0.670 GC content %: 43.011 | |
| Tdicoccoides_TRIDC4BG028540.16 TRIDC4BG028540.16 |
Low | No | 3832 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -27.698 AMFE: -0.668 GC content %: 41.493 | |
| Tdicoccoides_TRIDC4BG028540.17 TRIDC4BG028540.17 |
Low | No | 4938 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -27.047 AMFE: -0.680 GC content %: 39.753 | |
| Tdicoccoides_TRIDC4BG028540.18 TRIDC4BG028540.18 |
Low | No | 1778 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -31.277 AMFE: -0.662 GC content %: 47.244 | |
| Tdicoccoides_TRIDC4BG028540.19 TRIDC4BG028540.19 |
Low | No | 3991 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -27.590 AMFE: -0.668 GC content %: 41.318 | |
| Tdicoccoides_TRIDC4BG028540.2 TRIDC4BG028540.2 |
Low | No | 3897 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -27.811 AMFE: -0.692 GC content %: 40.210 | |
| Tdicoccoides_TRIDC4BG028540.20 TRIDC4BG028540.20 |
Low | No | 2700 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -28.737 AMFE: -0.668 GC content %: 43.000 | |
| Tdicoccoides_TRIDC4BG028540.21 TRIDC4BG028540.21 |
Low | No | 3525 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -27.960 AMFE: -0.687 GC content %: 40.709 | |
| Tdicoccoides_TRIDC4BG028540.3 TRIDC4BG028540.3 |
Low | No | 4077 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -27.682 AMFE: -0.669 GC content %: 41.354 | |
| Tdicoccoides_TRIDC4BG028540.4 TRIDC4BG028540.4 |
Low | No | 3450 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -28.322 AMFE: -0.691 GC content %: 40.986 | |
| Tdicoccoides_TRIDC4BG028540.5 TRIDC4BG028540.5 |
Low | No | 3388 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -27.978 AMFE: -0.682 GC content %: 40.998 | |
| Tdicoccoides_TRIDC4BG028540.6 TRIDC4BG028540.6 |
Low | No | 2547 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -28.583 AMFE: -0.657 GC content %: 43.502 | |
| Tdicoccoides_TRIDC4BG028540.7 TRIDC4BG028540.7 |
Low | No | 3978 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -27.637 AMFE: -0.665 GC content %: 41.528 | |
| Tdicoccoides_TRIDC4BG028540.8 TRIDC4BG028540.8 |
Low | No | 2608 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -28.612 AMFE: -0.660 GC content %: 43.328 | |
| Tdicoccoides_TRIDC4BG028540.9 TRIDC4BG028540.9 |
Low | No | 3993 | OG0000314 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -27.596 AMFE: -0.666 GC content %: 41.422 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG028540.17 | SwissProt | 2021-04-01 | P48631 | 9.29e-8 |
| Tdicoccoides_TRIDC4BG028540.12 | SwissProt | 2021-04-01 | Q8GZC3 | 2.62e-5 |
| Tdicoccoides_TRIDC4BG028540.8 | SwissProt | 2021-04-01 | P48631 | 4.27e-8 |
| Tdicoccoides_TRIDC4BG028540.3 | SwissProt | 2021-04-01 | P48631 | 2.5e-8 |
| Tdicoccoides_TRIDC4BG028540.18 | SwissProt | 2021-04-01 | Q8GZC3 | 3.04e-6 |
| Tdicoccoides_TRIDC4BG028540.13 | SwissProt | 2021-04-01 | P48631 | 1.61e-8 |
| Tdicoccoides_TRIDC4BG028540.9 | SwissProt | 2021-04-01 | P48631 | 7.25e-8 |
| Tdicoccoides_TRIDC4BG028540.4 | SwissProt | 2021-04-01 | P48631 | 6.08e-8 |
| Tdicoccoides_TRIDC4BG028540.19 | SwissProt | 2021-04-01 | P48631 | 2.44e-8 |
| Tdicoccoides_TRIDC4BG028540.14 | SwissProt | 2021-04-01 | P48631 | 2.48e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
