Tdicoccoides TRIDC4BG028730
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG028730 [ TRIDC4BG028730] |
4B | 333053588 | 333059536 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG028730.1 TRIDC4BG028730.1 |
Low | Yes | 2365 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -32.296 AMFE: -0.696 GC content %: 46.385 | |
| Tdicoccoides_TRIDC4BG028730.10 TRIDC4BG028730.10 |
Low | No | 2820 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -29.230 AMFE: -0.687 GC content %: 42.553 | |
| Tdicoccoides_TRIDC4BG028730.11 TRIDC4BG028730.11 |
Low | No | 3582 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -28.671 AMFE: -0.680 GC content %: 42.155 | |
| Tdicoccoides_TRIDC4BG028730.12 TRIDC4BG028730.12 |
Low | No | 1219 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -25.644 AMFE: -0.647 GC content %: 39.623 | |
| Tdicoccoides_TRIDC4BG028730.13 TRIDC4BG028730.13 |
Low | Yes | 2496 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -30.585 AMFE: -0.696 GC content %: 43.950 | |
| Tdicoccoides_TRIDC4BG028730.14 TRIDC4BG028730.14 |
Low | Yes | 2653 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -31.101 AMFE: -0.697 GC content %: 44.591 | |
| Tdicoccoides_TRIDC4BG028730.15 TRIDC4BG028730.15 |
Low | Yes | 2453 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -30.591 AMFE: -0.693 GC content %: 44.150 | |
| Tdicoccoides_TRIDC4BG028730.16 TRIDC4BG028730.16 |
Low | Yes | 2278 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -31.466 AMFE: -0.693 GC content %: 45.391 | |
| Tdicoccoides_TRIDC4BG028730.17 TRIDC4BG028730.17 |
Low | Yes | 1687 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -32.602 AMFE: -0.697 GC content %: 46.769 | |
| Tdicoccoides_TRIDC4BG028730.18 TRIDC4BG028730.18 |
Low | No | 1390 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -26.950 AMFE: -0.668 GC content %: 40.360 | |
| Tdicoccoides_TRIDC4BG028730.2 TRIDC4BG028730.2 |
Low | Yes | 2250 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -32.671 AMFE: -0.705 GC content %: 46.311 | |
| Tdicoccoides_TRIDC4BG028730.3 TRIDC4BG028730.3 |
Low | Yes | 2646 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -31.323 AMFE: -0.692 GC content %: 45.276 | |
| Tdicoccoides_TRIDC4BG028730.4 TRIDC4BG028730.4 |
High | No | 1692 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -27.370 AMFE: -0.658 GC content %: 41.608 | |
| Tdicoccoides_TRIDC4BG028730.5 TRIDC4BG028730.5 |
High | No | 2327 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -30.408 AMFE: -0.680 GC content %: 44.693 | |
| Tdicoccoides_TRIDC4BG028730.6 TRIDC4BG028730.6 |
Low | Yes | 2512 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -31.357 AMFE: -0.693 GC content %: 45.223 | |
| Tdicoccoides_TRIDC4BG028730.7 TRIDC4BG028730.7 |
Low | No | 2030 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -28.217 AMFE: -0.680 GC content %: 41.478 | |
| Tdicoccoides_TRIDC4BG028730.8 TRIDC4BG028730.8 |
High | No | 2149 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -30.237 AMFE: -0.683 GC content %: 44.300 | |
| Tdicoccoides_TRIDC4BG028730.9 TRIDC4BG028730.9 |
High | No | 2086 | OG0000099 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -30.048 AMFE: -0.672 GC content %: 44.727 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG028730.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4BG028730.2 | Rfam | 14.6 | mir-885 | 0.0016 |
| Tdicoccoides_TRIDC4BG028730.13 | Rfam | 14.6 | mir-885 | 0.0018 |
| Tdicoccoides_TRIDC4BG028730.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4BG028730.3 | Rfam | 14.6 | mir-885 | 0.0019 |
| Tdicoccoides_TRIDC4BG028730.14 | Rfam | 14.6 | mir-885 | 0.0019 |
| Tdicoccoides_TRIDC4BG028730.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC4BG028730.6 | Rfam | 14.6 | mir-885 | 0.0018 |
| Tdicoccoides_TRIDC4BG028730.15 | Rfam | 14.6 | mir-885 | 0.0017 |
| Tdicoccoides_TRIDC4BG028730.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
