Tdicoccoides TRIDC4BG031180
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG031180 [ TRIDC4BG031180] |
4B | 382845754 | 382849921 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG031180.1 TRIDC4BG031180.1 |
Low | No | 2278 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -29.535 AMFE: -0.668 GC content %: 44.205 | |
| Tdicoccoides_TRIDC4BG031180.10 TRIDC4BG031180.10 |
Low | No | 3301 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -27.049 AMFE: -0.667 GC content %: 40.533 | |
| Tdicoccoides_TRIDC4BG031180.11 TRIDC4BG031180.11 |
High | No | 2203 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -25.629 AMFE: -0.655 GC content %: 39.128 | |
| Tdicoccoides_TRIDC4BG031180.13 TRIDC4BG031180.13 |
Low | No | 2482 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.368 Folding energies... MFEI: -28.928 AMFE: -0.667 GC content %: 43.352 | |
| Tdicoccoides_TRIDC4BG031180.14 TRIDC4BG031180.14 |
Low | No | 2389 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -28.974 AMFE: -0.668 GC content %: 43.407 | |
| Tdicoccoides_TRIDC4BG031180.15 TRIDC4BG031180.15 |
Low | No | 3199 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.534 Folding energies... MFEI: -26.527 AMFE: -0.659 GC content %: 40.231 | |
| Tdicoccoides_TRIDC4BG031180.16 TRIDC4BG031180.16 |
Low | No | 2366 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -28.263 AMFE: -0.657 GC content %: 43.026 | |
| Tdicoccoides_TRIDC4BG031180.17 TRIDC4BG031180.17 |
Low | No | 2937 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -26.456 AMFE: -0.669 GC content %: 39.564 | |
| Tdicoccoides_TRIDC4BG031180.18 TRIDC4BG031180.18 |
High | No | 979 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -30.072 AMFE: -0.641 GC content %: 46.885 | |
| Tdicoccoides_TRIDC4BG031180.19 TRIDC4BG031180.19 |
Low | No | 2959 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -26.708 AMFE: -0.675 GC content %: 39.540 | |
| Tdicoccoides_TRIDC4BG031180.2 TRIDC4BG031180.2 |
Low | No | 3108 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -26.229 AMFE: -0.670 GC content %: 39.157 | |
| Tdicoccoides_TRIDC4BG031180.20 TRIDC4BG031180.20 |
Low | No | 3477 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.530 Folding energies... MFEI: -27.253 AMFE: -0.672 GC content %: 40.581 | |
| Tdicoccoides_TRIDC4BG031180.21 TRIDC4BG031180.21 |
Low | No | 2480 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -28.980 AMFE: -0.670 GC content %: 43.266 | |
| Tdicoccoides_TRIDC4BG031180.23 TRIDC4BG031180.23 |
Low | No | 2711 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -25.850 AMFE: -0.662 GC content %: 39.026 | |
| Tdicoccoides_TRIDC4BG031180.24 TRIDC4BG031180.24 |
Low | No | 2881 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -26.421 AMFE: -0.669 GC content %: 39.500 | |
| Tdicoccoides_TRIDC4BG031180.26 TRIDC4BG031180.26 |
Low | No | 2492 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -28.945 AMFE: -0.669 GC content %: 43.258 | |
| Tdicoccoides_TRIDC4BG031180.29 TRIDC4BG031180.29 |
Low | No | 2151 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -28.108 AMFE: -0.671 GC content %: 41.887 | |
| Tdicoccoides_TRIDC4BG031180.3 TRIDC4BG031180.3 |
Low | No | 2320 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.491 Folding energies... MFEI: -29.302 AMFE: -0.664 GC content %: 44.138 | |
| Tdicoccoides_TRIDC4BG031180.30 TRIDC4BG031180.30 |
High | No | 1051 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -30.590 AMFE: -0.663 GC content %: 46.147 | |
| Tdicoccoides_TRIDC4BG031180.31 TRIDC4BG031180.31 |
High | No | 1871 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -26.072 AMFE: -0.650 GC content %: 40.086 | |
| Tdicoccoides_TRIDC4BG031180.32 TRIDC4BG031180.32 |
Low | No | 2538 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -28.002 AMFE: -0.685 GC content %: 40.898 | |
| Tdicoccoides_TRIDC4BG031180.33 TRIDC4BG031180.33 |
Low | No | 2239 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -27.829 AMFE: -0.676 GC content %: 41.179 | |
| Tdicoccoides_TRIDC4BG031180.34 TRIDC4BG031180.34 |
Low | No | 1834 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -28.860 AMFE: -0.674 GC content %: 42.803 | |
| Tdicoccoides_TRIDC4BG031180.35 TRIDC4BG031180.35 |
Low | No | 2873 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -26.255 AMFE: -0.672 GC content %: 39.053 | |
| Tdicoccoides_TRIDC4BG031180.36 TRIDC4BG031180.36 |
Low | No | 2049 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -28.721 AMFE: -0.661 GC content %: 43.436 | |
| Tdicoccoides_TRIDC4BG031180.37 TRIDC4BG031180.37 |
Low | No | 3104 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.509 Folding energies... MFEI: -26.289 AMFE: -0.663 GC content %: 39.626 | |
| Tdicoccoides_TRIDC4BG031180.38 TRIDC4BG031180.38 |
Low | No | 2450 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -28.698 AMFE: -0.673 GC content %: 42.612 | |
| Tdicoccoides_TRIDC4BG031180.39 TRIDC4BG031180.39 |
Low | No | 2182 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -28.181 AMFE: -0.668 GC content %: 42.209 | |
| Tdicoccoides_TRIDC4BG031180.4 TRIDC4BG031180.4 |
Low | No | 1974 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.708 AMFE: -0.675 GC content %: 42.553 | |
| Tdicoccoides_TRIDC4BG031180.40 TRIDC4BG031180.40 |
Low | No | 2363 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -28.574 AMFE: -0.670 GC content %: 42.658 | |
| Tdicoccoides_TRIDC4BG031180.41 TRIDC4BG031180.41 |
Low | No | 2441 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -28.537 AMFE: -0.671 GC content %: 42.524 | |
| Tdicoccoides_TRIDC4BG031180.42 TRIDC4BG031180.42 |
Low | No | 1855 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -28.059 AMFE: -0.674 GC content %: 41.617 | |
| Tdicoccoides_TRIDC4BG031180.43 TRIDC4BG031180.43 |
Low | No | 1984 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -27.278 AMFE: -0.666 GC content %: 40.978 | |
| Tdicoccoides_TRIDC4BG031180.44 TRIDC4BG031180.44 |
High | No | 1536 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -22.214 AMFE: -0.660 GC content %: 33.659 | |
| Tdicoccoides_TRIDC4BG031180.6 TRIDC4BG031180.6 |
Low | No | 3393 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.528 Folding energies... MFEI: -27.123 AMFE: -0.669 GC content %: 40.554 | |
| Tdicoccoides_TRIDC4BG031180.7 TRIDC4BG031180.7 |
Low | No | 2162 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -29.135 AMFE: -0.685 GC content %: 42.507 | |
| Tdicoccoides_TRIDC4BG031180.8 TRIDC4BG031180.8 |
Low | No | 3474 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -0.359 Folding energies... MFEI: -27.317 AMFE: -0.674 GC content %: 40.558 | |
| Tdicoccoides_TRIDC4BG031180.9 TRIDC4BG031180.9 |
Low | No | 3298 | OG0000100 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -27.065 AMFE: -0.668 GC content %: 40.509 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG031180.20 | SwissProt | 2021-04-01 | Q84SL0 | 2.12e-11 |
| Tdicoccoides_TRIDC4BG031180.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.37 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.32 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.40 | SwissProt | 2021-04-01 | Q84SL0 | 1.0e-11 |
| Tdicoccoides_TRIDC4BG031180.23 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.42 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC4BG031180.26 | SwissProt | 2021-04-01 | Q9SSF8 | 1.42e-11 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
