Tdicoccoides TRIDC4BG031430
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG031430 [ TRIDC4BG031430] |
4B | 385006731 | 385013148 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG031430.1 TRIDC4BG031430.1 |
Low | No | 2135 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -32.932 AMFE: -0.666 GC content %: 49.461 | |
| Tdicoccoides_TRIDC4BG031430.10 TRIDC4BG031430.10 |
Low | No | 2461 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -30.187 AMFE: -0.647 GC content %: 46.688 | |
| Tdicoccoides_TRIDC4BG031430.11 TRIDC4BG031430.11 |
Low | No | 2539 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -30.583 AMFE: -0.653 GC content %: 46.829 | |
| Tdicoccoides_TRIDC4BG031430.12 TRIDC4BG031430.12 |
Low | No | 2122 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -29.496 AMFE: -0.647 GC content %: 45.617 | |
| Tdicoccoides_TRIDC4BG031430.13 TRIDC4BG031430.13 |
Low | No | 2467 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -30.584 AMFE: -0.656 GC content %: 46.615 | |
| Tdicoccoides_TRIDC4BG031430.14 TRIDC4BG031430.14 |
Low | No | 2389 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -30.176 AMFE: -0.649 GC content %: 46.463 | |
| Tdicoccoides_TRIDC4BG031430.15 TRIDC4BG031430.15 |
Low | No | 1603 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -29.906 AMFE: -0.633 GC content %: 47.224 | |
| Tdicoccoides_TRIDC4BG031430.16 TRIDC4BG031430.16 |
Low | No | 2250 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -30.107 AMFE: -0.649 GC content %: 46.356 | |
| Tdicoccoides_TRIDC4BG031430.17 TRIDC4BG031430.17 |
Low | No | 1602 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -30.150 AMFE: -0.647 GC content %: 46.629 | |
| Tdicoccoides_TRIDC4BG031430.18 TRIDC4BG031430.18 |
Low | No | 2046 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -30.152 AMFE: -0.647 GC content %: 46.628 | |
| Tdicoccoides_TRIDC4BG031430.19 TRIDC4BG031430.19 |
Low | No | 1937 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -29.850 AMFE: -0.643 GC content %: 46.412 | |
| Tdicoccoides_TRIDC4BG031430.2 TRIDC4BG031430.2 |
Low | No | 2304 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -31.545 AMFE: -0.651 GC content %: 48.481 | |
| Tdicoccoides_TRIDC4BG031430.20 TRIDC4BG031430.20 |
Low | No | 2009 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -29.632 AMFE: -0.649 GC content %: 45.645 | |
| Tdicoccoides_TRIDC4BG031430.21 TRIDC4BG031430.21 |
Low | No | 2070 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -30.401 AMFE: -0.644 GC content %: 47.198 | |
| Tdicoccoides_TRIDC4BG031430.22 TRIDC4BG031430.22 |
Low | No | 2452 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.445 AMFE: -0.642 GC content %: 45.840 | |
| Tdicoccoides_TRIDC4BG031430.23 TRIDC4BG031430.23 |
Low | No | 2180 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -29.959 AMFE: -0.638 GC content %: 46.927 | |
| Tdicoccoides_TRIDC4BG031430.24 TRIDC4BG031430.24 |
Low | No | 2375 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -29.128 AMFE: -0.638 GC content %: 45.642 | |
| Tdicoccoides_TRIDC4BG031430.25 TRIDC4BG031430.25 |
Low | No | 2549 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -29.364 AMFE: -0.649 GC content %: 45.273 | |
| Tdicoccoides_TRIDC4BG031430.26 TRIDC4BG031430.26 |
Low | No | 2441 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.152 AMFE: -0.643 GC content %: 45.309 | |
| Tdicoccoides_TRIDC4BG031430.27 TRIDC4BG031430.27 |
Low | No | 2281 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.562 AMFE: -0.647 GC content %: 45.682 | |
| Tdicoccoides_TRIDC4BG031430.28 TRIDC4BG031430.28 |
Low | No | 2686 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -28.031 AMFE: -0.630 GC content %: 44.527 | |
| Tdicoccoides_TRIDC4BG031430.29 TRIDC4BG031430.29 |
Low | No | 2291 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.188 AMFE: -0.639 GC content %: 45.701 | |
| Tdicoccoides_TRIDC4BG031430.3 TRIDC4BG031430.3 |
Low | No | 2208 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -31.739 AMFE: -0.656 GC content %: 48.370 | |
| Tdicoccoides_TRIDC4BG031430.30 TRIDC4BG031430.30 |
Low | No | 2424 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.064 AMFE: -0.643 GC content %: 45.173 | |
| Tdicoccoides_TRIDC4BG031430.31 TRIDC4BG031430.31 |
Low | No | 2333 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -29.134 AMFE: -0.646 GC content %: 45.092 | |
| Tdicoccoides_TRIDC4BG031430.32 TRIDC4BG031430.32 |
Low | No | 2284 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.488 AMFE: -0.660 GC content %: 44.658 | |
| Tdicoccoides_TRIDC4BG031430.33 TRIDC4BG031430.33 |
Low | No | 2473 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -28.670 AMFE: -0.650 GC content %: 44.116 | |
| Tdicoccoides_TRIDC4BG031430.34 TRIDC4BG031430.34 |
Low | No | 1496 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -28.844 AMFE: -0.638 GC content %: 45.187 | |
| Tdicoccoides_TRIDC4BG031430.35 TRIDC4BG031430.35 |
Low | No | 1644 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -28.808 AMFE: -0.647 GC content %: 44.526 | |
| Tdicoccoides_TRIDC4BG031430.36 TRIDC4BG031430.36 |
Low | No | 1861 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -28.920 AMFE: -0.652 GC content %: 44.385 | |
| Tdicoccoides_TRIDC4BG031430.37 TRIDC4BG031430.37 |
Low | No | 2213 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -29.282 AMFE: -0.648 GC content %: 45.188 | |
| Tdicoccoides_TRIDC4BG031430.38 TRIDC4BG031430.38 |
Low | No | 2195 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -28.843 AMFE: -0.646 GC content %: 44.647 | |
| Tdicoccoides_TRIDC4BG031430.39 TRIDC4BG031430.39 |
Low | No | 2155 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -29.239 AMFE: -0.648 GC content %: 45.151 | |
| Tdicoccoides_TRIDC4BG031430.4 TRIDC4BG031430.4 |
Low | No | 2287 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -31.246 AMFE: -0.656 GC content %: 47.617 | |
| Tdicoccoides_TRIDC4BG031430.5 TRIDC4BG031430.5 |
Low | No | 2093 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -31.696 AMFE: -0.651 GC content %: 48.686 | |
| Tdicoccoides_TRIDC4BG031430.6 TRIDC4BG031430.6 |
Low | No | 2645 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -30.726 AMFE: -0.659 GC content %: 46.654 | |
| Tdicoccoides_TRIDC4BG031430.7 TRIDC4BG031430.7 |
Low | No | 2392 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -31.421 AMFE: -0.660 GC content %: 47.617 | |
| Tdicoccoides_TRIDC4BG031430.8 TRIDC4BG031430.8 |
Low | No | 2501 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -31.036 AMFE: -0.655 GC content %: 47.381 | |
| Tdicoccoides_TRIDC4BG031430.9 TRIDC4BG031430.9 |
Low | No | 2631 | OG0000090 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -30.570 AMFE: -0.659 GC content %: 46.408 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG031430.39 | SwissProt | 2021-04-01 | Q9FLA5 | 2.81e-5 |
| Tdicoccoides_TRIDC4BG031430.1 | SwissProt | 2021-04-01 | Q9FLA5 | 2.78e-5 |
| Tdicoccoides_TRIDC4BG031430.24 | SwissProt | 2021-04-01 | Q9FLA5 | 3.2e-5 |
| Tdicoccoides_TRIDC4BG031430.34 | SwissProt | 2021-04-01 | Q9FLA5 | 1.65e-5 |
| Tdicoccoides_TRIDC4BG031430.2 | SwissProt | 2021-04-01 | Q9FLA5 | 3.08e-5 |
| Tdicoccoides_TRIDC4BG031430.9 | SwissProt | 2021-04-01 | Q5ZDJ6 | 5.99e-7 |
| Tdicoccoides_TRIDC4BG031430.15 | SwissProt | 2021-04-01 | Q9FLA5 | 1.84e-5 |
| Tdicoccoides_TRIDC4BG031430.3 | SwissProt | 2021-04-01 | Q9FLA5 | 2.9e-5 |
| Tdicoccoides_TRIDC4BG031430.4 | SwissProt | 2021-04-01 | Q9FLA5 | 3.04e-5 |
| Tdicoccoides_TRIDC4BG031430.10 | SwissProt | 2021-04-01 | Q9FLA5 | 3.35e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
