Tdicoccoides TRIDC4BG032460
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG032460 [ TRIDC4BG032460] |
4B | 398006648 | 398010867 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG032460.1 TRIDC4BG032460.1 |
High | No | 3625 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -27.774 AMFE: -0.652 GC content %: 42.593 | |
| Tdicoccoides_TRIDC4BG032460.10 TRIDC4BG032460.10 |
High | No | 770 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -33.732 AMFE: -0.548 GC content %: 61.558 | |
| Tdicoccoides_TRIDC4BG032460.11 TRIDC4BG032460.11 |
High | No | 568 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -34.085 AMFE: -0.552 GC content %: 61.796 | |
| Tdicoccoides_TRIDC4BG032460.2 TRIDC4BG032460.2 |
High | No | 1747 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -25.461 AMFE: -0.667 GC content %: 38.180 | |
| Tdicoccoides_TRIDC4BG032460.3 TRIDC4BG032460.3 |
High | No | 3107 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -25.294 AMFE: -0.679 GC content %: 37.238 | |
| Tdicoccoides_TRIDC4BG032460.4 TRIDC4BG032460.4 |
High | No | 2415 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -25.106 AMFE: -0.663 GC content %: 37.847 | |
| Tdicoccoides_TRIDC4BG032460.5 TRIDC4BG032460.5 |
High | No | 2824 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -26.278 AMFE: -0.677 GC content %: 38.810 | |
| Tdicoccoides_TRIDC4BG032460.6 TRIDC4BG032460.6 |
High | No | 3856 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -27.378 AMFE: -0.650 GC content %: 42.116 | |
| Tdicoccoides_TRIDC4BG032460.7 TRIDC4BG032460.7 |
High | No | 3290 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -28.495 AMFE: -0.651 GC content %: 43.739 | |
| Tdicoccoides_TRIDC4BG032460.8 TRIDC4BG032460.8 |
High | No | 1658 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -25.603 AMFE: -0.667 GC content %: 38.359 | |
| Tdicoccoides_TRIDC4BG032460.9 TRIDC4BG032460.9 |
High | No | 1625 | OG0001840 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -25.163 AMFE: -0.658 GC content %: 38.215 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
