Tdicoccoides TRIDC4BG040430
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG040430 [ TRIDC4BG040430] |
4B | 485804317 | 485808645 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG040430.1 TRIDC4BG040430.1 |
High | No | 1732 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -28.464 AMFE: -0.673 GC content %: 42.263 | |
| Tdicoccoides_TRIDC4BG040430.10 TRIDC4BG040430.10 |
Low | No | 1946 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -29.681 AMFE: -0.669 GC content %: 44.347 | |
| Tdicoccoides_TRIDC4BG040430.11 TRIDC4BG040430.11 |
Low | No | 1867 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -30.214 AMFE: -0.665 GC content %: 45.420 | |
| Tdicoccoides_TRIDC4BG040430.12 TRIDC4BG040430.12 |
High | No | 1881 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -27.985 AMFE: -0.672 GC content %: 41.627 | |
| Tdicoccoides_TRIDC4BG040430.13 TRIDC4BG040430.13 |
Low | No | 2155 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -31.165 AMFE: -0.643 GC content %: 48.492 | |
| Tdicoccoides_TRIDC4BG040430.14 TRIDC4BG040430.14 |
Low | No | 2356 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -30.577 AMFE: -0.643 GC content %: 47.538 | |
| Tdicoccoides_TRIDC4BG040430.15 TRIDC4BG040430.15 |
High | No | 1942 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -28.095 AMFE: -0.680 GC content %: 41.298 | |
| Tdicoccoides_TRIDC4BG040430.16 TRIDC4BG040430.16 |
High | No | 1999 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -28.164 AMFE: -0.682 GC content %: 41.271 | |
| Tdicoccoides_TRIDC4BG040430.17 TRIDC4BG040430.17 |
High | No | 2251 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -27.486 AMFE: -0.666 GC content %: 41.271 | |
| Tdicoccoides_TRIDC4BG040430.18 TRIDC4BG040430.18 |
High | No | 2119 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -27.862 AMFE: -0.676 GC content %: 41.199 | |
| Tdicoccoides_TRIDC4BG040430.19 TRIDC4BG040430.19 |
Low | No | 1888 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -28.771 AMFE: -0.654 GC content %: 43.962 | |
| Tdicoccoides_TRIDC4BG040430.2 TRIDC4BG040430.2 |
High | No | 1647 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -28.081 AMFE: -0.659 GC content %: 42.623 | |
| Tdicoccoides_TRIDC4BG040430.20 TRIDC4BG040430.20 |
Low | No | 1915 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -29.744 AMFE: -0.669 GC content %: 44.491 | |
| Tdicoccoides_TRIDC4BG040430.21 TRIDC4BG040430.21 |
Low | No | 2391 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -28.528 AMFE: -0.660 GC content %: 43.246 | |
| Tdicoccoides_TRIDC4BG040430.22 TRIDC4BG040430.22 |
High | No | 1912 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -27.903 AMFE: -0.672 GC content %: 41.527 | |
| Tdicoccoides_TRIDC4BG040430.23 TRIDC4BG040430.23 |
High | No | 1685 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.439 AMFE: -0.668 GC content %: 42.552 | |
| Tdicoccoides_TRIDC4BG040430.24 TRIDC4BG040430.24 |
High | No | 1611 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -28.821 AMFE: -0.678 GC content %: 42.520 | |
| Tdicoccoides_TRIDC4BG040430.25 TRIDC4BG040430.25 |
High | No | 1729 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -28.213 AMFE: -0.668 GC content %: 42.221 | |
| Tdicoccoides_TRIDC4BG040430.26 TRIDC4BG040430.26 |
High | No | 1596 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -28.647 AMFE: -0.672 GC content %: 42.607 | |
| Tdicoccoides_TRIDC4BG040430.27 TRIDC4BG040430.27 |
High | No | 1560 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -28.833 AMFE: -0.673 GC content %: 42.821 | |
| Tdicoccoides_TRIDC4BG040430.28 TRIDC4BG040430.28 |
Low | No | 2157 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -30.723 AMFE: -0.648 GC content %: 47.427 | |
| Tdicoccoides_TRIDC4BG040430.29 TRIDC4BG040430.29 |
Low | No | 1091 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -31.668 AMFE: -0.623 GC content %: 50.871 | |
| Tdicoccoides_TRIDC4BG040430.3 TRIDC4BG040430.3 |
High | No | 1677 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.330 AMFE: -0.666 GC content %: 42.516 | |
| Tdicoccoides_TRIDC4BG040430.4 TRIDC4BG040430.4 |
High | No | 2202 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -27.434 AMFE: -0.662 GC content %: 41.417 | |
| Tdicoccoides_TRIDC4BG040430.5 TRIDC4BG040430.5 |
High | No | 2435 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -27.121 AMFE: -0.662 GC content %: 40.945 | |
| Tdicoccoides_TRIDC4BG040430.6 TRIDC4BG040430.6 |
High | No | 1582 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -28.729 AMFE: -0.665 GC content %: 43.173 | |
| Tdicoccoides_TRIDC4BG040430.7 TRIDC4BG040430.7 |
Low | No | 2640 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -30.061 AMFE: -0.645 GC content %: 46.591 | |
| Tdicoccoides_TRIDC4BG040430.8 TRIDC4BG040430.8 |
Low | No | 2384 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -30.491 AMFE: -0.644 GC content %: 47.315 | |
| Tdicoccoides_TRIDC4BG040430.9 TRIDC4BG040430.9 |
High | No | 1804 | OG0000234 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -28.176 AMFE: -0.669 GC content %: 42.129 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG040430.11 | SwissProt | 2021-04-01 | Q9VNX8 | 5.88e-4 |
| Tdicoccoides_TRIDC4BG040430.28 | SwissProt | 2021-04-01 | Q9BY44 | 7.36e-9 |
| Tdicoccoides_TRIDC4BG040430.13 | SwissProt | 2021-04-01 | Q9BY44 | 7.35e-9 |
| Tdicoccoides_TRIDC4BG040430.29 | SwissProt | 2021-04-01 | Q9BY44 | 8.31e-7 |
| Tdicoccoides_TRIDC4BG040430.14 | SwissProt | 2021-04-01 | Q9BY44 | 8.1e-9 |
| Tdicoccoides_TRIDC4BG040430.7 | SwissProt | 2021-04-01 | Q9BY44 | 9.15e-9 |
| Tdicoccoides_TRIDC4BG040430.19 | SwissProt | 2021-04-01 | Q9BY44 | 6.34e-9 |
| Tdicoccoides_TRIDC4BG040430.8 | SwissProt | 2021-04-01 | Q9BY44 | 2.09e-6 |
| Tdicoccoides_TRIDC4BG040430.20 | SwissProt | 2021-04-01 | Q9BY44 | 6.44e-9 |
| Tdicoccoides_TRIDC4BG040430.10 | SwissProt | 2021-04-01 | Q9VNX8 | 2.87e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
