Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG054880 [ TRIDC4BG054880] |
4B | 623340167 | 623350154 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC4BG054880.27 TRIDC4BG054880.27 |
Low | No | 1413 | OG0002268 | Get ORF Coding potential... Type: noncoding Potential: -0.223 Folding energies... MFEI: -33.616 AMFE: -0.671 GC content %: 50.106 | |
Tdicoccoides_TRIDC4BG054880.30 TRIDC4BG054880.30 |
High | No | 1563 | OG0002268 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -34.024 AMFE: -0.641 GC content %: 53.039 | |
Tdicoccoides_TRIDC4BG054880.31 TRIDC4BG054880.31 |
High | No | 789 | OG0002268 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -30.406 AMFE: -0.640 GC content %: 47.529 | |
Tdicoccoides_TRIDC4BG054880.32 TRIDC4BG054880.32 |
High | No | 1030 | OG0002268 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -35.777 AMFE: -0.672 GC content %: 53.204 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC4BG054880.27 | SwissProt | 2021-04-01 | Q8GYR4 | 7.13e-20 |