Tdicoccoides TRIDC4BG055190
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG055190 [ TRIDC4BG055190] |
4B | 625293987 | 625301231 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG055190.1 TRIDC4BG055190.1 |
High | No | 3644 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -28.035 AMFE: -0.677 GC content %: 41.383 | |
| Tdicoccoides_TRIDC4BG055190.10 TRIDC4BG055190.10 |
High | No | 3808 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -28.256 AMFE: -0.670 GC content %: 42.148 | |
| Tdicoccoides_TRIDC4BG055190.11 TRIDC4BG055190.11 |
High | No | 3551 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -28.485 AMFE: -0.678 GC content %: 41.988 | |
| Tdicoccoides_TRIDC4BG055190.12 TRIDC4BG055190.12 |
High | No | 3008 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -27.912 AMFE: -0.678 GC content %: 41.190 | |
| Tdicoccoides_TRIDC4BG055190.13 TRIDC4BG055190.13 |
High | No | 3307 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.880 AMFE: -0.677 GC content %: 41.185 | |
| Tdicoccoides_TRIDC4BG055190.14 TRIDC4BG055190.14 |
High | No | 3288 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.427 AMFE: -0.677 GC content %: 40.511 | |
| Tdicoccoides_TRIDC4BG055190.15 TRIDC4BG055190.15 |
High | No | 3432 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -27.421 AMFE: -0.666 GC content %: 41.200 | |
| Tdicoccoides_TRIDC4BG055190.2 TRIDC4BG055190.2 |
Low | No | 6038 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -29.101 AMFE: -0.672 GC content %: 43.326 | |
| Tdicoccoides_TRIDC4BG055190.3 TRIDC4BG055190.3 |
Low | No | 6253 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -29.343 AMFE: -0.677 GC content %: 43.355 | |
| Tdicoccoides_TRIDC4BG055190.4 TRIDC4BG055190.4 |
Low | No | 6164 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -29.054 AMFE: -0.673 GC content %: 43.202 | |
| Tdicoccoides_TRIDC4BG055190.5 TRIDC4BG055190.5 |
High | No | 3955 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -27.869 AMFE: -0.670 GC content %: 41.618 | |
| Tdicoccoides_TRIDC4BG055190.6 TRIDC4BG055190.6 |
Low | No | 6094 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -29.381 AMFE: -0.677 GC content %: 43.371 | |
| Tdicoccoides_TRIDC4BG055190.7 TRIDC4BG055190.7 |
High | No | 1441 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -31.298 AMFE: -0.671 GC content %: 46.634 | |
| Tdicoccoides_TRIDC4BG055190.9 TRIDC4BG055190.9 |
High | No | 3715 | OG0000875 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -27.281 AMFE: -0.663 GC content %: 41.131 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC4BG055190.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Tdicoccoides_TRIDC4BG055190.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Tdicoccoides_TRIDC4BG055190.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Tdicoccoides_TRIDC4BG055190.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
